Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12360

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12350 and SGL_RS12355 are separated by 0 nucleotidesSGL_RS12355 and SGL_RS12360 overlap by 26 nucleotidesSGL_RS12360 and SGL_RS12365 are separated by 30 nucleotidesSGL_RS12365 and SGL_RS12370 are separated by 224 nucleotidesSGL_RS12370 and SGL_RS12375 are separated by 21 nucleotides SGL_RS12350: SGL_RS12350 - MFS transporter, at 2,231,639 to 2,233,036 _RS12350 SGL_RS12355: SGL_RS12355 - exodeoxyribonuclease III, at 2,233,037 to 2,233,834 _RS12355 SGL_RS12360: SGL_RS12360 - DUF3750 domain-containing protein, at 2,233,809 to 2,234,273 _RS12360 SGL_RS12365: SGL_RS12365 - nucleoside-diphosphate kinase, at 2,234,304 to 2,234,753 _RS12365 SGL_RS12370: SGL_RS12370 - tRNA-Ala, at 2,234,978 to 2,235,050 _RS12370 SGL_RS12375: SGL_RS12375 - hypothetical protein, at 2,235,072 to 2,235,482 _RS12375 Position (kb) 2233 2234 2235Strain fitness (log2 ratio) -2 -1 0 1at 2232.920 kb on + strandat 2233.372 kb on + strand, within SGL_RS12355at 2233.417 kb on - strand, within SGL_RS12355at 2233.475 kb on + strand, within SGL_RS12355at 2233.475 kb on + strand, within SGL_RS12355at 2233.529 kb on - strand, within SGL_RS12355at 2233.564 kb on - strand, within SGL_RS12355at 2233.646 kb on + strand, within SGL_RS12355at 2233.868 kb on + strand, within SGL_RS12360at 2233.869 kb on - strand, within SGL_RS12360at 2233.969 kb on + strand, within SGL_RS12360at 2234.116 kb on + strand, within SGL_RS12360at 2234.158 kb on - strand, within SGL_RS12360at 2234.328 kb on - strandat 2234.365 kb on - strand, within SGL_RS12365at 2234.411 kb on + strand, within SGL_RS12365at 2234.540 kb on - strand, within SGL_RS12365at 2234.867 kb on - strandat 2234.959 kb on + strandat 2235.159 kb on + strand, within SGL_RS12375

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,232,920 + -0.2
2,233,372 + SGL_RS12355 0.42 +1.1
2,233,417 - SGL_RS12355 0.48 -0.8
2,233,475 + SGL_RS12355 0.55 +0.9
2,233,475 + SGL_RS12355 0.55 +0.6
2,233,529 - SGL_RS12355 0.62 -0.2
2,233,564 - SGL_RS12355 0.66 +0.6
2,233,646 + SGL_RS12355 0.76 +1.5
2,233,868 + SGL_RS12360 0.13 +1.1
2,233,869 - SGL_RS12360 0.13 +0.3
2,233,969 + SGL_RS12360 0.34 +1.1
2,234,116 + SGL_RS12360 0.66 +1.0
2,234,158 - SGL_RS12360 0.75 +1.4
2,234,328 - +1.2
2,234,365 - SGL_RS12365 0.14 -2.6
2,234,411 + SGL_RS12365 0.24 -2.2
2,234,540 - SGL_RS12365 0.52 -1.8
2,234,867 - -0.4
2,234,959 + +0.6
2,235,159 + SGL_RS12375 0.21 +0.1

Or see this region's nucleotide sequence