Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12225 and SGL_RS12230 are separated by 99 nucleotides SGL_RS12230 and SGL_RS12235 are separated by 210 nucleotides SGL_RS12235 and SGL_RS12240 are separated by 82 nucleotides
SGL_RS12225: SGL_RS12225 - ATP-dependent Clp protease proteolytic subunit, at 2,205,774 to 2,206,451
_RS12225
SGL_RS12230: SGL_RS12230 - ATP-dependent Clp protease proteolytic subunit, at 2,206,551 to 2,207,159
_RS12230
SGL_RS12235: SGL_RS12235 - aminopeptidase P N-terminal domain-containing protein, at 2,207,370 to 2,208,695
_RS12235
SGL_RS12240: SGL_RS12240 - S-methyl-5'-thioadenosine phosphorylase, at 2,208,778 to 2,209,758
_RS12240
Position (kb)
2207
2208
2209 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2206.379 kb on - strand, within SGL_RS12225 at 2207.025 kb on + strand, within SGL_RS12230 at 2207.290 kb on - strand at 2207.358 kb on - strand at 2207.470 kb on - strand at 2207.540 kb on + strand, within SGL_RS12235 at 2208.128 kb on + strand, within SGL_RS12235 at 2208.215 kb on - strand, within SGL_RS12235 at 2208.407 kb on + strand, within SGL_RS12235 at 2208.609 kb on + strand at 2208.783 kb on + strand at 2208.791 kb on + strand at 2209.000 kb on - strand, within SGL_RS12240 at 2209.008 kb on - strand, within SGL_RS12240 at 2209.216 kb on + strand, within SGL_RS12240 at 2209.363 kb on + strand, within SGL_RS12240 at 2209.366 kb on - strand, within SGL_RS12240 at 2209.464 kb on + strand, within SGL_RS12240 at 2209.550 kb on - strand, within SGL_RS12240
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 2,206,379 - SGL_RS12225 0.89 -2.4 2,207,025 + SGL_RS12230 0.78 -1.0 2,207,290 - +0.4 2,207,358 - -0.1 2,207,470 - -2.5 2,207,540 + SGL_RS12235 0.13 -3.8 2,208,128 + SGL_RS12235 0.57 -3.0 2,208,215 - SGL_RS12235 0.64 -3.9 2,208,407 + SGL_RS12235 0.78 -3.4 2,208,609 + -3.9 2,208,783 + +1.0 2,208,791 + -0.2 2,209,000 - SGL_RS12240 0.23 -1.1 2,209,008 - SGL_RS12240 0.23 -1.3 2,209,216 + SGL_RS12240 0.45 -1.1 2,209,363 + SGL_RS12240 0.60 -0.9 2,209,366 - SGL_RS12240 0.60 +0.1 2,209,464 + SGL_RS12240 0.70 -0.5 2,209,550 - SGL_RS12240 0.79 +1.3
Or see this region's nucleotide sequence