Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12235

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12225 and SGL_RS12230 are separated by 99 nucleotidesSGL_RS12230 and SGL_RS12235 are separated by 210 nucleotidesSGL_RS12235 and SGL_RS12240 are separated by 82 nucleotides SGL_RS12225: SGL_RS12225 - ATP-dependent Clp protease proteolytic subunit, at 2,205,774 to 2,206,451 _RS12225 SGL_RS12230: SGL_RS12230 - ATP-dependent Clp protease proteolytic subunit, at 2,206,551 to 2,207,159 _RS12230 SGL_RS12235: SGL_RS12235 - aminopeptidase P N-terminal domain-containing protein, at 2,207,370 to 2,208,695 _RS12235 SGL_RS12240: SGL_RS12240 - S-methyl-5'-thioadenosine phosphorylase, at 2,208,778 to 2,209,758 _RS12240 Position (kb) 2207 2208 2209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2206.379 kb on - strand, within SGL_RS12225at 2207.025 kb on + strand, within SGL_RS12230at 2207.290 kb on - strandat 2207.358 kb on - strandat 2207.470 kb on - strandat 2207.540 kb on + strand, within SGL_RS12235at 2208.128 kb on + strand, within SGL_RS12235at 2208.215 kb on - strand, within SGL_RS12235at 2208.407 kb on + strand, within SGL_RS12235at 2208.609 kb on + strandat 2208.783 kb on + strandat 2208.791 kb on + strandat 2209.000 kb on - strand, within SGL_RS12240at 2209.008 kb on - strand, within SGL_RS12240at 2209.216 kb on + strand, within SGL_RS12240at 2209.363 kb on + strand, within SGL_RS12240at 2209.366 kb on - strand, within SGL_RS12240at 2209.464 kb on + strand, within SGL_RS12240at 2209.550 kb on - strand, within SGL_RS12240

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,206,379 - SGL_RS12225 0.89 -2.4
2,207,025 + SGL_RS12230 0.78 -1.0
2,207,290 - +0.4
2,207,358 - -0.1
2,207,470 - -2.5
2,207,540 + SGL_RS12235 0.13 -3.8
2,208,128 + SGL_RS12235 0.57 -3.0
2,208,215 - SGL_RS12235 0.64 -3.9
2,208,407 + SGL_RS12235 0.78 -3.4
2,208,609 + -3.9
2,208,783 + +1.0
2,208,791 + -0.2
2,209,000 - SGL_RS12240 0.23 -1.1
2,209,008 - SGL_RS12240 0.23 -1.3
2,209,216 + SGL_RS12240 0.45 -1.1
2,209,363 + SGL_RS12240 0.60 -0.9
2,209,366 - SGL_RS12240 0.60 +0.1
2,209,464 + SGL_RS12240 0.70 -0.5
2,209,550 - SGL_RS12240 0.79 +1.3

Or see this region's nucleotide sequence