Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11605

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11600 and SGL_RS11605 overlap by 4 nucleotidesSGL_RS11605 and SGL_RS11610 are separated by 125 nucleotides SGL_RS11600: SGL_RS11600 - glycosyltransferase, at 2,054,482 to 2,057,472 _RS11600 SGL_RS11605: SGL_RS11605 - glycosyltransferase, at 2,057,469 to 2,060,975 _RS11605 SGL_RS11610: SGL_RS11610 - class I SAM-dependent methyltransferase, at 2,061,101 to 2,062,621 _RS11610 Position (kb) 2057 2058 2059 2060 2061Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2057.539 kb on + strandat 2057.636 kb on - strandat 2057.687 kb on - strandat 2057.719 kb on + strandat 2057.726 kb on - strandat 2057.986 kb on + strand, within SGL_RS11605at 2058.073 kb on - strand, within SGL_RS11605at 2058.576 kb on - strand, within SGL_RS11605at 2058.637 kb on + strand, within SGL_RS11605at 2059.321 kb on - strand, within SGL_RS11605at 2059.693 kb on + strand, within SGL_RS11605at 2059.724 kb on - strand, within SGL_RS11605at 2060.401 kb on - strand, within SGL_RS11605at 2060.903 kb on + strandat 2061.490 kb on + strand, within SGL_RS11610at 2061.505 kb on + strand, within SGL_RS11610at 2061.778 kb on - strand, within SGL_RS11610

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,057,539 + -1.6
2,057,636 - -3.4
2,057,687 - -1.6
2,057,719 + -5.7
2,057,726 - -5.5
2,057,986 + SGL_RS11605 0.15 -4.3
2,058,073 - SGL_RS11605 0.17 -3.7
2,058,576 - SGL_RS11605 0.32 -2.0
2,058,637 + SGL_RS11605 0.33 -2.7
2,059,321 - SGL_RS11605 0.53 -3.5
2,059,693 + SGL_RS11605 0.63 -2.7
2,059,724 - SGL_RS11605 0.64 -2.8
2,060,401 - SGL_RS11605 0.84 -4.2
2,060,903 + -5.4
2,061,490 + SGL_RS11610 0.26 -5.0
2,061,505 + SGL_RS11610 0.27 -3.2
2,061,778 - SGL_RS11610 0.45 -2.4

Or see this region's nucleotide sequence