Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11135

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11125 and SGL_RS11130 are separated by 107 nucleotidesSGL_RS11130 and SGL_RS11135 are separated by 78 nucleotidesSGL_RS11135 and SGL_RS11140 are separated by 110 nucleotides SGL_RS11125: SGL_RS11125 - 50S ribosomal protein L21, at 1,957,758 to 1,958,132 _RS11125 SGL_RS11130: SGL_RS11130 - 50S ribosomal protein L27, at 1,958,240 to 1,958,503 _RS11130 SGL_RS11135: SGL_RS11135 - D-alanyl-D-alanine dipeptidase DdpX, at 1,958,582 to 1,959,325 _RS11135 SGL_RS11140: SGL_RS11140 - citramalate synthase, at 1,959,436 to 1,961,079 _RS11140 Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1958.127 kb on + strandat 1958.686 kb on - strand, within SGL_RS11135at 1958.849 kb on - strand, within SGL_RS11135at 1959.290 kb on - strandat 1959.546 kb on + strandat 1959.738 kb on - strand, within SGL_RS11140at 1959.792 kb on - strand, within SGL_RS11140at 1959.792 kb on - strand, within SGL_RS11140at 1959.840 kb on - strand, within SGL_RS11140at 1959.845 kb on - strand, within SGL_RS11140at 1959.878 kb on + strand, within SGL_RS11140at 1959.908 kb on - strand, within SGL_RS11140at 1959.994 kb on + strand, within SGL_RS11140at 1959.994 kb on + strand, within SGL_RS11140at 1959.994 kb on + strand, within SGL_RS11140at 1960.059 kb on - strand, within SGL_RS11140at 1960.120 kb on + strand, within SGL_RS11140at 1960.158 kb on - strand, within SGL_RS11140at 1960.260 kb on - strand, within SGL_RS11140

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,958,127 + +0.3
1,958,686 - SGL_RS11135 0.14 -4.5
1,958,849 - SGL_RS11135 0.36 -3.1
1,959,290 - -2.6
1,959,546 + +0.8
1,959,738 - SGL_RS11140 0.18 -0.9
1,959,792 - SGL_RS11140 0.22 -0.4
1,959,792 - SGL_RS11140 0.22 -0.5
1,959,840 - SGL_RS11140 0.25 -0.7
1,959,845 - SGL_RS11140 0.25 -1.1
1,959,878 + SGL_RS11140 0.27 +0.4
1,959,908 - SGL_RS11140 0.29 -0.4
1,959,994 + SGL_RS11140 0.34 +0.1
1,959,994 + SGL_RS11140 0.34 +0.2
1,959,994 + SGL_RS11140 0.34 -0.5
1,960,059 - SGL_RS11140 0.38 -0.2
1,960,120 + SGL_RS11140 0.42 -0.7
1,960,158 - SGL_RS11140 0.44 +0.3
1,960,260 - SGL_RS11140 0.50 -0.3

Or see this region's nucleotide sequence