Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10475

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10460 and SGL_RS10465 are separated by 45 nucleotidesSGL_RS10465 and SGL_RS10470 are separated by 235 nucleotidesSGL_RS10470 and SGL_RS10475 are separated by 130 nucleotidesSGL_RS10475 and SGL_RS10480 are separated by 281 nucleotides SGL_RS10460: SGL_RS10460 - hypothetical protein, at 1,822,054 to 1,822,620 _RS10460 SGL_RS10465: SGL_RS10465 - universal stress protein, at 1,822,666 to 1,823,130 _RS10465 SGL_RS10470: SGL_RS10470 - tRNA-Arg, at 1,823,366 to 1,823,439 _RS10470 SGL_RS10475: SGL_RS10475 - cytochrome b6-f complex subunit PetG, at 1,823,570 to 1,823,686 _RS10475 SGL_RS10480: SGL_RS10480 - metallophosphoesterase family protein, at 1,823,968 to 1,824,732 _RS10480 Position (kb) 1823 1824Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1822.606 kb on + strandat 1822.664 kb on + strandat 1822.724 kb on - strand, within SGL_RS10465at 1822.854 kb on - strand, within SGL_RS10465at 1822.897 kb on + strand, within SGL_RS10465at 1822.905 kb on - strand, within SGL_RS10465at 1823.023 kb on - strand, within SGL_RS10465at 1823.097 kb on + strandat 1823.265 kb on - strandat 1824.016 kb on + strandat 1824.036 kb on + strandat 1824.079 kb on + strand, within SGL_RS10480at 1824.188 kb on + strand, within SGL_RS10480at 1824.214 kb on + strand, within SGL_RS10480at 1824.239 kb on - strand, within SGL_RS10480at 1824.349 kb on + strand, within SGL_RS10480at 1824.349 kb on + strand, within SGL_RS10480at 1824.352 kb on - strand, within SGL_RS10480at 1824.357 kb on - strand, within SGL_RS10480at 1824.380 kb on + strand, within SGL_RS10480at 1824.383 kb on - strand, within SGL_RS10480at 1824.415 kb on + strand, within SGL_RS10480at 1824.517 kb on + strand, within SGL_RS10480at 1824.627 kb on + strand, within SGL_RS10480

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,822,606 + +0.9
1,822,664 + +0.5
1,822,724 - SGL_RS10465 0.12 +0.5
1,822,854 - SGL_RS10465 0.40 -0.0
1,822,897 + SGL_RS10465 0.50 -0.7
1,822,905 - SGL_RS10465 0.51 +0.2
1,823,023 - SGL_RS10465 0.77 +0.3
1,823,097 + -0.7
1,823,265 - +0.1
1,824,016 + +0.3
1,824,036 + -1.2
1,824,079 + SGL_RS10480 0.15 -5.8
1,824,188 + SGL_RS10480 0.29 -5.3
1,824,214 + SGL_RS10480 0.32 -3.5
1,824,239 - SGL_RS10480 0.35 -3.5
1,824,349 + SGL_RS10480 0.50 -7.5
1,824,349 + SGL_RS10480 0.50 -5.7
1,824,352 - SGL_RS10480 0.50 -6.4
1,824,357 - SGL_RS10480 0.51 -6.4
1,824,380 + SGL_RS10480 0.54 -3.3
1,824,383 - SGL_RS10480 0.54 -6.0
1,824,415 + SGL_RS10480 0.58 -5.6
1,824,517 + SGL_RS10480 0.72 -1.9
1,824,627 + SGL_RS10480 0.86 -6.9

Or see this region's nucleotide sequence