Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10460 and SGL_RS10465 are separated by 45 nucleotides SGL_RS10465 and SGL_RS10470 are separated by 235 nucleotides SGL_RS10470 and SGL_RS10475 are separated by 130 nucleotides SGL_RS10475 and SGL_RS10480 are separated by 281 nucleotides
SGL_RS10460: SGL_RS10460 - hypothetical protein, at 1,822,054 to 1,822,620
_RS10460
SGL_RS10465: SGL_RS10465 - universal stress protein, at 1,822,666 to 1,823,130
_RS10465
SGL_RS10470: SGL_RS10470 - tRNA-Arg, at 1,823,366 to 1,823,439
_RS10470
SGL_RS10475: SGL_RS10475 - cytochrome b6-f complex subunit PetG, at 1,823,570 to 1,823,686
_RS10475
SGL_RS10480: SGL_RS10480 - metallophosphoesterase family protein, at 1,823,968 to 1,824,732
_RS10480
Position (kb)
1823
1824 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1822.606 kb on + strand at 1822.664 kb on + strand at 1822.724 kb on - strand, within SGL_RS10465 at 1822.854 kb on - strand, within SGL_RS10465 at 1822.897 kb on + strand, within SGL_RS10465 at 1822.905 kb on - strand, within SGL_RS10465 at 1823.023 kb on - strand, within SGL_RS10465 at 1823.097 kb on + strand at 1823.265 kb on - strand at 1824.016 kb on + strand at 1824.036 kb on + strand at 1824.079 kb on + strand, within SGL_RS10480 at 1824.188 kb on + strand, within SGL_RS10480 at 1824.214 kb on + strand, within SGL_RS10480 at 1824.239 kb on - strand, within SGL_RS10480 at 1824.349 kb on + strand, within SGL_RS10480 at 1824.349 kb on + strand, within SGL_RS10480 at 1824.352 kb on - strand, within SGL_RS10480 at 1824.357 kb on - strand, within SGL_RS10480 at 1824.380 kb on + strand, within SGL_RS10480 at 1824.383 kb on - strand, within SGL_RS10480 at 1824.415 kb on + strand, within SGL_RS10480 at 1824.517 kb on + strand, within SGL_RS10480 at 1824.627 kb on + strand, within SGL_RS10480
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 1,822,606 + +0.9 1,822,664 + +0.5 1,822,724 - SGL_RS10465 0.12 +0.5 1,822,854 - SGL_RS10465 0.40 -0.0 1,822,897 + SGL_RS10465 0.50 -0.7 1,822,905 - SGL_RS10465 0.51 +0.2 1,823,023 - SGL_RS10465 0.77 +0.3 1,823,097 + -0.7 1,823,265 - +0.1 1,824,016 + +0.3 1,824,036 + -1.2 1,824,079 + SGL_RS10480 0.15 -5.8 1,824,188 + SGL_RS10480 0.29 -5.3 1,824,214 + SGL_RS10480 0.32 -3.5 1,824,239 - SGL_RS10480 0.35 -3.5 1,824,349 + SGL_RS10480 0.50 -7.5 1,824,349 + SGL_RS10480 0.50 -5.7 1,824,352 - SGL_RS10480 0.50 -6.4 1,824,357 - SGL_RS10480 0.51 -6.4 1,824,380 + SGL_RS10480 0.54 -3.3 1,824,383 - SGL_RS10480 0.54 -6.0 1,824,415 + SGL_RS10480 0.58 -5.6 1,824,517 + SGL_RS10480 0.72 -1.9 1,824,627 + SGL_RS10480 0.86 -6.9
Or see this region's nucleotide sequence