Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08875

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08870 and SGL_RS08875 are separated by 79 nucleotidesSGL_RS08875 and SGL_RS08880 are separated by 189 nucleotidesSGL_RS08880 and SGL_RS08885 are separated by 231 nucleotides SGL_RS08870: SGL_RS08870 - potassium-transporting ATPase subunit KdpB, at 1,494,758 to 1,496,830 _RS08870 SGL_RS08875: SGL_RS08875 - potassium-transporting ATPase subunit F, at 1,496,910 to 1,497,116 _RS08875 SGL_RS08880: SGL_RS08880 - K(+)-transporting ATPase subunit C, at 1,497,306 to 1,497,878 _RS08880 SGL_RS08885: SGL_RS08885 - sensor histidine kinase KdpD, at 1,498,110 to 1,499,222 _RS08885 Position (kb) 1496 1497 1498Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1495.937 kb on + strand, within SGL_RS08870at 1495.952 kb on + strand, within SGL_RS08870at 1495.960 kb on - strand, within SGL_RS08870at 1495.991 kb on - strand, within SGL_RS08870at 1496.126 kb on - strand, within SGL_RS08870at 1496.206 kb on - strand, within SGL_RS08870at 1496.211 kb on - strand, within SGL_RS08870at 1496.330 kb on - strand, within SGL_RS08870at 1496.380 kb on + strand, within SGL_RS08870at 1496.459 kb on - strand, within SGL_RS08870at 1496.460 kb on + strand, within SGL_RS08870at 1496.526 kb on + strand, within SGL_RS08870at 1496.544 kb on - strand, within SGL_RS08870at 1496.635 kb on - strandat 1496.653 kb on + strandat 1496.671 kb on - strandat 1496.841 kb on + strandat 1496.942 kb on - strand, within SGL_RS08875at 1497.028 kb on - strand, within SGL_RS08875at 1497.038 kb on - strand, within SGL_RS08875at 1497.188 kb on + strandat 1497.332 kb on + strandat 1497.345 kb on - strandat 1497.428 kb on - strand, within SGL_RS08880at 1497.439 kb on - strand, within SGL_RS08880at 1497.439 kb on - strand, within SGL_RS08880at 1497.464 kb on - strand, within SGL_RS08880at 1497.590 kb on + strand, within SGL_RS08880at 1497.611 kb on - strand, within SGL_RS08880at 1497.635 kb on - strand, within SGL_RS08880at 1497.649 kb on - strand, within SGL_RS08880at 1497.698 kb on - strand, within SGL_RS08880at 1497.773 kb on - strand, within SGL_RS08880at 1497.837 kb on - strandat 1497.880 kb on - strandat 1497.977 kb on + strandat 1498.047 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,495,937 + SGL_RS08870 0.57 -5.2
1,495,952 + SGL_RS08870 0.58 -4.5
1,495,960 - SGL_RS08870 0.58 -3.3
1,495,991 - SGL_RS08870 0.59 -4.0
1,496,126 - SGL_RS08870 0.66 -5.7
1,496,206 - SGL_RS08870 0.70 -4.4
1,496,211 - SGL_RS08870 0.70 -4.5
1,496,330 - SGL_RS08870 0.76 -5.1
1,496,380 + SGL_RS08870 0.78 -5.9
1,496,459 - SGL_RS08870 0.82 -3.8
1,496,460 + SGL_RS08870 0.82 -3.1
1,496,526 + SGL_RS08870 0.85 -5.8
1,496,544 - SGL_RS08870 0.86 -4.1
1,496,635 - -4.0
1,496,653 + -3.3
1,496,671 - -2.0
1,496,841 + -3.7
1,496,942 - SGL_RS08875 0.15 -3.9
1,497,028 - SGL_RS08875 0.57 -4.2
1,497,038 - SGL_RS08875 0.62 -5.7
1,497,188 + -4.2
1,497,332 + -4.5
1,497,345 - -3.1
1,497,428 - SGL_RS08880 0.21 -4.4
1,497,439 - SGL_RS08880 0.23 -5.2
1,497,439 - SGL_RS08880 0.23 -3.8
1,497,464 - SGL_RS08880 0.28 -6.1
1,497,590 + SGL_RS08880 0.50 -0.6
1,497,611 - SGL_RS08880 0.53 -3.9
1,497,635 - SGL_RS08880 0.57 -4.1
1,497,649 - SGL_RS08880 0.60 -3.7
1,497,698 - SGL_RS08880 0.68 -5.1
1,497,773 - SGL_RS08880 0.82 -4.2
1,497,837 - -4.3
1,497,880 - -1.3
1,497,977 + +0.7
1,498,047 - -1.0

Or see this region's nucleotide sequence