Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08870 and SGL_RS08875 are separated by 79 nucleotides SGL_RS08875 and SGL_RS08880 are separated by 189 nucleotides SGL_RS08880 and SGL_RS08885 are separated by 231 nucleotides
SGL_RS08870: SGL_RS08870 - potassium-transporting ATPase subunit KdpB, at 1,494,758 to 1,496,830
_RS08870
SGL_RS08875: SGL_RS08875 - potassium-transporting ATPase subunit F, at 1,496,910 to 1,497,116
_RS08875
SGL_RS08880: SGL_RS08880 - K(+)-transporting ATPase subunit C, at 1,497,306 to 1,497,878
_RS08880
SGL_RS08885: SGL_RS08885 - sensor histidine kinase KdpD, at 1,498,110 to 1,499,222
_RS08885
Position (kb)
1496
1497
1498 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1495.937 kb on + strand, within SGL_RS08870 at 1495.952 kb on + strand, within SGL_RS08870 at 1495.960 kb on - strand, within SGL_RS08870 at 1495.991 kb on - strand, within SGL_RS08870 at 1496.126 kb on - strand, within SGL_RS08870 at 1496.206 kb on - strand, within SGL_RS08870 at 1496.211 kb on - strand, within SGL_RS08870 at 1496.330 kb on - strand, within SGL_RS08870 at 1496.380 kb on + strand, within SGL_RS08870 at 1496.459 kb on - strand, within SGL_RS08870 at 1496.460 kb on + strand, within SGL_RS08870 at 1496.526 kb on + strand, within SGL_RS08870 at 1496.544 kb on - strand, within SGL_RS08870 at 1496.635 kb on - strand at 1496.653 kb on + strand at 1496.671 kb on - strand at 1496.841 kb on + strand at 1496.942 kb on - strand, within SGL_RS08875 at 1497.028 kb on - strand, within SGL_RS08875 at 1497.038 kb on - strand, within SGL_RS08875 at 1497.188 kb on + strand at 1497.332 kb on + strand at 1497.345 kb on - strand at 1497.428 kb on - strand, within SGL_RS08880 at 1497.439 kb on - strand, within SGL_RS08880 at 1497.439 kb on - strand, within SGL_RS08880 at 1497.464 kb on - strand, within SGL_RS08880 at 1497.590 kb on + strand, within SGL_RS08880 at 1497.611 kb on - strand, within SGL_RS08880 at 1497.635 kb on - strand, within SGL_RS08880 at 1497.649 kb on - strand, within SGL_RS08880 at 1497.698 kb on - strand, within SGL_RS08880 at 1497.773 kb on - strand, within SGL_RS08880 at 1497.837 kb on - strand at 1497.880 kb on - strand at 1497.977 kb on + strand at 1498.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 1,495,937 + SGL_RS08870 0.57 -5.2 1,495,952 + SGL_RS08870 0.58 -4.5 1,495,960 - SGL_RS08870 0.58 -3.3 1,495,991 - SGL_RS08870 0.59 -4.0 1,496,126 - SGL_RS08870 0.66 -5.7 1,496,206 - SGL_RS08870 0.70 -4.4 1,496,211 - SGL_RS08870 0.70 -4.5 1,496,330 - SGL_RS08870 0.76 -5.1 1,496,380 + SGL_RS08870 0.78 -5.9 1,496,459 - SGL_RS08870 0.82 -3.8 1,496,460 + SGL_RS08870 0.82 -3.1 1,496,526 + SGL_RS08870 0.85 -5.8 1,496,544 - SGL_RS08870 0.86 -4.1 1,496,635 - -4.0 1,496,653 + -3.3 1,496,671 - -2.0 1,496,841 + -3.7 1,496,942 - SGL_RS08875 0.15 -3.9 1,497,028 - SGL_RS08875 0.57 -4.2 1,497,038 - SGL_RS08875 0.62 -5.7 1,497,188 + -4.2 1,497,332 + -4.5 1,497,345 - -3.1 1,497,428 - SGL_RS08880 0.21 -4.4 1,497,439 - SGL_RS08880 0.23 -5.2 1,497,439 - SGL_RS08880 0.23 -3.8 1,497,464 - SGL_RS08880 0.28 -6.1 1,497,590 + SGL_RS08880 0.50 -0.6 1,497,611 - SGL_RS08880 0.53 -3.9 1,497,635 - SGL_RS08880 0.57 -4.1 1,497,649 - SGL_RS08880 0.60 -3.7 1,497,698 - SGL_RS08880 0.68 -5.1 1,497,773 - SGL_RS08880 0.82 -4.2 1,497,837 - -4.3 1,497,880 - -1.3 1,497,977 + +0.7 1,498,047 - -1.0
Or see this region's nucleotide sequence