Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07910

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07900 and SGL_RS07905 are separated by 141 nucleotidesSGL_RS07905 and SGL_RS07910 are separated by 122 nucleotidesSGL_RS07910 and SGL_RS07915 are separated by 74 nucleotidesSGL_RS07915 and SGL_RS07920 are separated by 122 nucleotides SGL_RS07900: SGL_RS07900 - DUF362 domain-containing protein, at 1,289,389 to 1,290,354 _RS07900 SGL_RS07905: SGL_RS07905 - DUF29 domain-containing protein, at 1,290,496 to 1,290,957 _RS07905 SGL_RS07910: SGL_RS07910 - DUF29 domain-containing protein, at 1,291,080 to 1,291,556 _RS07910 SGL_RS07915: SGL_RS07915 - DUF29 domain-containing protein, at 1,291,631 to 1,292,092 _RS07915 SGL_RS07920: SGL_RS07920 - DUF29 domain-containing protein, at 1,292,215 to 1,292,679 _RS07920 Position (kb) 1291 1292Strain fitness (log2 ratio) -3 -2 -1 0 1at 1290.143 kb on + strand, within SGL_RS07900at 1290.220 kb on - strand, within SGL_RS07900at 1290.263 kb on + strandat 1290.265 kb on + strandat 1290.455 kb on + strandat 1290.463 kb on - strandat 1290.463 kb on - strandat 1290.475 kb on - strandat 1291.442 kb on + strand, within SGL_RS07910at 1291.472 kb on + strand, within SGL_RS07910at 1291.577 kb on + strandat 1291.881 kb on - strand, within SGL_RS07915at 1292.353 kb on + strand, within SGL_RS07920

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,290,143 + SGL_RS07900 0.78 +0.1
1,290,220 - SGL_RS07900 0.86 +0.2
1,290,263 + -0.2
1,290,265 + -1.0
1,290,455 + +0.3
1,290,463 - +0.3
1,290,463 - +1.2
1,290,475 - -3.5
1,291,442 + SGL_RS07910 0.76 -0.5
1,291,472 + SGL_RS07910 0.82 +0.1
1,291,577 + +0.8
1,291,881 - SGL_RS07915 0.54 -0.2
1,292,353 + SGL_RS07920 0.30 +0.1

Or see this region's nucleotide sequence