Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07675

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07670 and SGL_RS07675 are separated by 10 nucleotidesSGL_RS07675 and SGL_RS07680 are separated by 204 nucleotidesSGL_RS07680 and SGL_RS07685 are separated by 159 nucleotides SGL_RS07670: SGL_RS07670 - riboflavin biosynthesis protein RibF, at 1,240,361 to 1,241,302 _RS07670 SGL_RS07675: SGL_RS07675 - HpsJ family protein, at 1,241,313 to 1,242,131 _RS07675 SGL_RS07680: SGL_RS07680 - DUF3143 domain-containing protein, at 1,242,336 to 1,242,605 _RS07680 SGL_RS07685: SGL_RS07685 - Calvin cycle protein CP12, at 1,242,765 to 1,242,989 _RS07685 Position (kb) 1241 1242 1243Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1240.351 kb on + strandat 1241.746 kb on - strand, within SGL_RS07675at 1241.780 kb on - strand, within SGL_RS07675at 1241.793 kb on - strand, within SGL_RS07675at 1241.841 kb on + strand, within SGL_RS07675at 1241.923 kb on + strand, within SGL_RS07675at 1241.979 kb on - strand, within SGL_RS07675at 1242.150 kb on - strandat 1242.271 kb on - strandat 1242.417 kb on + strand, within SGL_RS07680at 1242.448 kb on - strand, within SGL_RS07680at 1242.668 kb on - strandat 1242.791 kb on - strand, within SGL_RS07685at 1242.791 kb on - strand, within SGL_RS07685at 1243.010 kb on + strandat 1243.020 kb on + strandat 1243.020 kb on + strandat 1243.026 kb on + strandat 1243.054 kb on + strandat 1243.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,240,351 + -0.0
1,241,746 - SGL_RS07675 0.53 -4.7
1,241,780 - SGL_RS07675 0.57 -0.8
1,241,793 - SGL_RS07675 0.59 -1.6
1,241,841 + SGL_RS07675 0.64 -3.5
1,241,923 + SGL_RS07675 0.74 -3.6
1,241,979 - SGL_RS07675 0.81 -4.9
1,242,150 - -2.3
1,242,271 - -0.5
1,242,417 + SGL_RS07680 0.30 +0.4
1,242,448 - SGL_RS07680 0.41 -0.1
1,242,668 - -0.8
1,242,791 - SGL_RS07685 0.12 -0.9
1,242,791 - SGL_RS07685 0.12 +1.3
1,243,010 + +1.1
1,243,020 + -0.0
1,243,020 + +0.5
1,243,026 + +0.7
1,243,054 + -0.4
1,243,054 + -1.0

Or see this region's nucleotide sequence