Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07540

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07535 and SGL_RS07540 overlap by 13 nucleotidesSGL_RS07540 and SGL_RS07545 are separated by 29 nucleotidesSGL_RS07545 and SGL_RS07550 are separated by 54 nucleotides SGL_RS07535: SGL_RS07535 - LysR family transcriptional regulator, at 1,216,281 to 1,217,168 _RS07535 SGL_RS07540: SGL_RS07540 - endonuclease MutS2, at 1,217,156 to 1,219,624 _RS07540 SGL_RS07545: SGL_RS07545 - serine/threonine-protein phosphatase, at 1,219,654 to 1,220,418 _RS07545 SGL_RS07550: SGL_RS07550 - AarF/ABC1/UbiB kinase family protein, at 1,220,473 to 1,222,230 _RS07550 Position (kb) 1217 1218 1219 1220Strain fitness (log2 ratio) -2 -1 0 1 2at 1216.362 kb on - strandat 1216.553 kb on - strand, within SGL_RS07535at 1216.567 kb on + strand, within SGL_RS07535at 1216.589 kb on - strand, within SGL_RS07535at 1216.627 kb on - strand, within SGL_RS07535at 1216.783 kb on - strand, within SGL_RS07535at 1216.795 kb on + strand, within SGL_RS07535at 1216.964 kb on - strand, within SGL_RS07535at 1216.964 kb on - strand, within SGL_RS07535at 1216.979 kb on + strand, within SGL_RS07535at 1217.057 kb on + strand, within SGL_RS07535at 1217.074 kb on + strand, within SGL_RS07535at 1217.463 kb on + strand, within SGL_RS07540at 1217.463 kb on + strand, within SGL_RS07540at 1217.574 kb on + strand, within SGL_RS07540at 1217.582 kb on - strand, within SGL_RS07540at 1217.642 kb on - strand, within SGL_RS07540at 1217.728 kb on - strand, within SGL_RS07540at 1217.736 kb on + strand, within SGL_RS07540at 1217.744 kb on + strand, within SGL_RS07540at 1217.949 kb on + strand, within SGL_RS07540at 1217.957 kb on - strand, within SGL_RS07540at 1217.972 kb on + strand, within SGL_RS07540at 1218.011 kb on - strand, within SGL_RS07540at 1218.044 kb on - strand, within SGL_RS07540at 1218.079 kb on - strand, within SGL_RS07540at 1218.103 kb on + strand, within SGL_RS07540at 1218.249 kb on + strand, within SGL_RS07540at 1218.267 kb on - strand, within SGL_RS07540at 1218.303 kb on - strand, within SGL_RS07540at 1218.676 kb on + strand, within SGL_RS07540at 1218.937 kb on - strand, within SGL_RS07540at 1219.021 kb on + strand, within SGL_RS07540at 1219.211 kb on + strand, within SGL_RS07540at 1219.298 kb on + strand, within SGL_RS07540at 1219.632 kb on - strandat 1219.634 kb on - strandat 1219.660 kb on + strandat 1219.671 kb on + strandat 1219.765 kb on + strand, within SGL_RS07545at 1219.833 kb on + strand, within SGL_RS07545at 1219.833 kb on + strand, within SGL_RS07545at 1219.841 kb on - strand, within SGL_RS07545at 1219.928 kb on + strand, within SGL_RS07545at 1219.934 kb on + strand, within SGL_RS07545at 1219.942 kb on - strand, within SGL_RS07545at 1219.957 kb on - strand, within SGL_RS07545at 1220.109 kb on - strand, within SGL_RS07545at 1220.260 kb on + strand, within SGL_RS07545at 1220.322 kb on - strand, within SGL_RS07545at 1220.465 kb on - strandat 1220.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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1,216,362 - +1.4
1,216,553 - SGL_RS07535 0.31 +0.7
1,216,567 + SGL_RS07535 0.32 +1.3
1,216,589 - SGL_RS07535 0.35 +1.0
1,216,627 - SGL_RS07535 0.39 +1.1
1,216,783 - SGL_RS07535 0.57 +1.5
1,216,795 + SGL_RS07535 0.58 +2.0
1,216,964 - SGL_RS07535 0.77 +1.1
1,216,964 - SGL_RS07535 0.77 +0.6
1,216,979 + SGL_RS07535 0.79 +1.2
1,217,057 + SGL_RS07535 0.87 +2.1
1,217,074 + SGL_RS07535 0.89 +1.5
1,217,463 + SGL_RS07540 0.12 +0.6
1,217,463 + SGL_RS07540 0.12 +1.4
1,217,574 + SGL_RS07540 0.17 +1.4
1,217,582 - SGL_RS07540 0.17 +1.0
1,217,642 - SGL_RS07540 0.20 +0.1
1,217,728 - SGL_RS07540 0.23 +1.7
1,217,736 + SGL_RS07540 0.23 +1.2
1,217,744 + SGL_RS07540 0.24 -0.6
1,217,949 + SGL_RS07540 0.32 +1.7
1,217,957 - SGL_RS07540 0.32 +0.8
1,217,972 + SGL_RS07540 0.33 +1.3
1,218,011 - SGL_RS07540 0.35 +0.9
1,218,044 - SGL_RS07540 0.36 +1.6
1,218,079 - SGL_RS07540 0.37 +0.2
1,218,103 + SGL_RS07540 0.38 +1.2
1,218,249 + SGL_RS07540 0.44 +0.7
1,218,267 - SGL_RS07540 0.45 +0.9
1,218,303 - SGL_RS07540 0.46 +2.3
1,218,676 + SGL_RS07540 0.62 -0.1
1,218,937 - SGL_RS07540 0.72 +1.9
1,219,021 + SGL_RS07540 0.76 +0.9
1,219,211 + SGL_RS07540 0.83 +1.4
1,219,298 + SGL_RS07540 0.87 +1.6
1,219,632 - -0.1
1,219,634 - -0.8
1,219,660 + +0.9
1,219,671 + +0.4
1,219,765 + SGL_RS07545 0.15 -0.8
1,219,833 + SGL_RS07545 0.23 -0.6
1,219,833 + SGL_RS07545 0.23 -0.5
1,219,841 - SGL_RS07545 0.24 +0.0
1,219,928 + SGL_RS07545 0.36 -1.1
1,219,934 + SGL_RS07545 0.37 +0.3
1,219,942 - SGL_RS07545 0.38 +0.0
1,219,957 - SGL_RS07545 0.40 +0.3
1,220,109 - SGL_RS07545 0.59 -0.8
1,220,260 + SGL_RS07545 0.79 +0.0
1,220,322 - SGL_RS07545 0.87 -2.2
1,220,465 - +2.3
1,220,595 - +0.6

Or see this region's nucleotide sequence