Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06625 and SGL_RS06630 are separated by 47 nucleotides SGL_RS06630 and SGL_RS06635 are separated by 104 nucleotides SGL_RS06635 and SGL_RS06640 are separated by 156 nucleotides SGL_RS06640 and SGL_RS06645 are separated by 28 nucleotides
SGL_RS06625: SGL_RS06625 - S41 family peptidase, at 1,015,511 to 1,016,782
_RS06625
SGL_RS06630: SGL_RS06630 - Uma2 family endonuclease, at 1,016,830 to 1,017,495
_RS06630
SGL_RS06635: SGL_RS06635 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 1,017,600 to 1,018,493
_RS06635
SGL_RS06640: SGL_RS06640 - DUF4168 domain-containing protein, at 1,018,650 to 1,019,126
_RS06640
SGL_RS06645: SGL_RS06645 - urease accessory protein UreE, at 1,019,155 to 1,019,583
_RS06645
Position (kb) 1017
1018
1019 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1016.842 kb on + strand at 1017.079 kb on + strand, within SGL_RS06630 at 1017.089 kb on + strand, within SGL_RS06630 at 1017.158 kb on - strand, within SGL_RS06630 at 1017.158 kb on - strand, within SGL_RS06630 at 1017.364 kb on - strand, within SGL_RS06630 at 1017.416 kb on + strand, within SGL_RS06630 at 1017.490 kb on - strand at 1018.165 kb on + strand, within SGL_RS06635 at 1018.315 kb on - strand, within SGL_RS06635 at 1018.326 kb on - strand, within SGL_RS06635 at 1018.460 kb on - strand at 1018.463 kb on + strand at 1018.503 kb on + strand at 1018.555 kb on - strand at 1018.653 kb on - strand at 1018.848 kb on + strand, within SGL_RS06640 at 1018.915 kb on + strand, within SGL_RS06640 at 1018.955 kb on - strand, within SGL_RS06640 at 1019.332 kb on + strand, within SGL_RS06645 at 1019.372 kb on - strand, within SGL_RS06645
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 1,016,842 + -0.2 1,017,079 + SGL_RS06630 0.37 +0.1 1,017,089 + SGL_RS06630 0.39 -0.4 1,017,158 - SGL_RS06630 0.49 -0.0 1,017,158 - SGL_RS06630 0.49 -0.1 1,017,364 - SGL_RS06630 0.80 +0.0 1,017,416 + SGL_RS06630 0.88 -0.3 1,017,490 - +0.3 1,018,165 + SGL_RS06635 0.63 -1.8 1,018,315 - SGL_RS06635 0.80 -3.0 1,018,326 - SGL_RS06635 0.81 -4.2 1,018,460 - -1.0 1,018,463 + -4.2 1,018,503 + -2.4 1,018,555 - +0.8 1,018,653 - -0.8 1,018,848 + SGL_RS06640 0.42 -2.0 1,018,915 + SGL_RS06640 0.56 -3.4 1,018,955 - SGL_RS06640 0.64 -1.2 1,019,332 + SGL_RS06645 0.41 -1.3 1,019,372 - SGL_RS06645 0.51 +0.3
Or see this region's nucleotide sequence