Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05540 and SGL_RS05545 are separated by 88 nucleotides SGL_RS05545 and SGL_RS05550 are separated by 47 nucleotides SGL_RS05550 and SGL_RS05555 are separated by 151 nucleotides
SGL_RS05540: SGL_RS05540 - cytochrome c oxidase subunit II, at 790,719 to 791,717
_RS05540
SGL_RS05545: SGL_RS05545 - cytochrome c oxidase subunit I, at 791,806 to 793,461
_RS05545
SGL_RS05550: SGL_RS05550 - cytochrome c oxidase subunit CtaE, at 793,509 to 794,210
_RS05550
SGL_RS05555: SGL_RS05555 - thioredoxin family protein, at 794,362 to 794,691
_RS05555
Position (kb) 791
792
793
794 Strain fitness (log2 ratio) -1
0
1
2 at 790.820 kb on - strand, within SGL_RS05540 at 790.878 kb on + strand, within SGL_RS05540 at 790.910 kb on - strand, within SGL_RS05540 at 791.049 kb on + strand, within SGL_RS05540 at 791.049 kb on - strand, within SGL_RS05540 at 791.105 kb on + strand, within SGL_RS05540 at 791.112 kb on + strand, within SGL_RS05540 at 791.120 kb on - strand, within SGL_RS05540 at 791.193 kb on + strand, within SGL_RS05540 at 791.201 kb on - strand, within SGL_RS05540 at 791.261 kb on + strand, within SGL_RS05540 at 791.298 kb on + strand, within SGL_RS05540 at 791.315 kb on + strand, within SGL_RS05540 at 791.318 kb on - strand, within SGL_RS05540 at 791.362 kb on - strand, within SGL_RS05540 at 791.393 kb on + strand, within SGL_RS05540 at 791.411 kb on + strand, within SGL_RS05540 at 791.471 kb on + strand, within SGL_RS05540 at 791.507 kb on - strand, within SGL_RS05540 at 791.529 kb on + strand, within SGL_RS05540 at 791.529 kb on + strand, within SGL_RS05540 at 791.607 kb on + strand, within SGL_RS05540 at 791.693 kb on - strand at 791.716 kb on + strand at 791.882 kb on + strand at 791.882 kb on + strand at 792.110 kb on + strand, within SGL_RS05545 at 792.143 kb on - strand, within SGL_RS05545 at 792.216 kb on - strand, within SGL_RS05545 at 792.225 kb on - strand, within SGL_RS05545 at 792.447 kb on - strand, within SGL_RS05545 at 792.614 kb on - strand, within SGL_RS05545 at 792.657 kb on + strand, within SGL_RS05545 at 792.677 kb on - strand, within SGL_RS05545 at 792.773 kb on - strand, within SGL_RS05545 at 792.773 kb on - strand, within SGL_RS05545 at 792.911 kb on + strand, within SGL_RS05545 at 793.164 kb on - strand, within SGL_RS05545 at 793.199 kb on + strand, within SGL_RS05545 at 793.199 kb on + strand, within SGL_RS05545 at 793.300 kb on + strand at 793.370 kb on + strand at 793.426 kb on + strand at 793.434 kb on - strand at 793.513 kb on - strand at 793.569 kb on - strand at 793.604 kb on - strand, within SGL_RS05550 at 793.633 kb on + strand, within SGL_RS05550 at 793.695 kb on + strand, within SGL_RS05550 at 793.744 kb on - strand, within SGL_RS05550 at 793.744 kb on - strand, within SGL_RS05550 at 793.746 kb on + strand, within SGL_RS05550 at 793.782 kb on + strand, within SGL_RS05550 at 793.849 kb on + strand, within SGL_RS05550 at 793.961 kb on - strand, within SGL_RS05550 at 794.064 kb on + strand, within SGL_RS05550 at 794.072 kb on - strand, within SGL_RS05550 at 794.260 kb on - strand at 794.286 kb on + strand at 794.299 kb on - strand at 794.320 kb on + strand at 794.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 790,820 - SGL_RS05540 0.10 +0.5 790,878 + SGL_RS05540 0.16 +0.5 790,910 - SGL_RS05540 0.19 +1.0 791,049 + SGL_RS05540 0.33 +0.9 791,049 - SGL_RS05540 0.33 +0.8 791,105 + SGL_RS05540 0.39 +1.0 791,112 + SGL_RS05540 0.39 +0.8 791,120 - SGL_RS05540 0.40 +0.1 791,193 + SGL_RS05540 0.47 +0.1 791,201 - SGL_RS05540 0.48 -0.4 791,261 + SGL_RS05540 0.54 +0.9 791,298 + SGL_RS05540 0.58 +1.2 791,315 + SGL_RS05540 0.60 -0.3 791,318 - SGL_RS05540 0.60 +0.9 791,362 - SGL_RS05540 0.64 -0.1 791,393 + SGL_RS05540 0.67 +0.7 791,411 + SGL_RS05540 0.69 -0.1 791,471 + SGL_RS05540 0.75 +0.9 791,507 - SGL_RS05540 0.79 +1.7 791,529 + SGL_RS05540 0.81 +0.9 791,529 + SGL_RS05540 0.81 -0.5 791,607 + SGL_RS05540 0.89 -0.2 791,693 - +1.0 791,716 + +0.3 791,882 + +0.2 791,882 + +1.0 792,110 + SGL_RS05545 0.18 +0.8 792,143 - SGL_RS05545 0.20 +1.2 792,216 - SGL_RS05545 0.25 +1.0 792,225 - SGL_RS05545 0.25 +0.8 792,447 - SGL_RS05545 0.39 +0.6 792,614 - SGL_RS05545 0.49 +1.2 792,657 + SGL_RS05545 0.51 +1.2 792,677 - SGL_RS05545 0.53 +1.1 792,773 - SGL_RS05545 0.58 +0.3 792,773 - SGL_RS05545 0.58 +1.2 792,911 + SGL_RS05545 0.67 +1.1 793,164 - SGL_RS05545 0.82 +1.5 793,199 + SGL_RS05545 0.84 +1.1 793,199 + SGL_RS05545 0.84 +1.1 793,300 + +0.9 793,370 + +0.6 793,426 + +0.3 793,434 - +0.9 793,513 - +0.5 793,569 - +0.9 793,604 - SGL_RS05550 0.14 +1.0 793,633 + SGL_RS05550 0.18 -0.5 793,695 + SGL_RS05550 0.26 +0.9 793,744 - SGL_RS05550 0.33 +0.3 793,744 - SGL_RS05550 0.33 +0.9 793,746 + SGL_RS05550 0.34 +0.7 793,782 + SGL_RS05550 0.39 +1.2 793,849 + SGL_RS05550 0.48 +1.0 793,961 - SGL_RS05550 0.64 +0.6 794,064 + SGL_RS05550 0.79 +0.0 794,072 - SGL_RS05550 0.80 +0.2 794,260 - +0.4 794,286 + +2.3 794,299 - +0.8 794,320 + +1.4 794,328 - -0.8
Or see this region's nucleotide sequence