Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05490 and SGL_RS05495 are separated by 208 nucleotides SGL_RS05495 and SGL_RS05500 are separated by 128 nucleotides SGL_RS05500 and SGL_RS05505 are separated by 681 nucleotides
SGL_RS05490: SGL_RS05490 - hypothetical protein, at 776,058 to 776,342
_RS05490
SGL_RS05495: SGL_RS05495 - hypothetical protein, at 776,551 to 776,937
_RS05495
SGL_RS05500: SGL_RS05500 - ribonuclease R, at 777,066 to 779,411
_RS05500
SGL_RS05505: SGL_RS05505 - TIGR03279 family radical SAM protein, at 780,093 to 781,448
_RS05505
Position (kb) 777
778
779
780 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 776.152 kb on + strand, within SGL_RS05490 at 776.285 kb on + strand, within SGL_RS05490 at 776.628 kb on + strand, within SGL_RS05495 at 776.628 kb on + strand, within SGL_RS05495 at 776.628 kb on + strand, within SGL_RS05495 at 776.636 kb on - strand, within SGL_RS05495 at 776.641 kb on - strand, within SGL_RS05495 at 776.736 kb on - strand, within SGL_RS05495 at 776.797 kb on + strand, within SGL_RS05495 at 777.055 kb on + strand at 777.247 kb on - strand at 777.366 kb on + strand, within SGL_RS05500 at 777.381 kb on - strand, within SGL_RS05500 at 777.682 kb on + strand, within SGL_RS05500 at 777.688 kb on - strand, within SGL_RS05500 at 777.688 kb on - strand, within SGL_RS05500 at 777.699 kb on - strand, within SGL_RS05500 at 777.707 kb on + strand, within SGL_RS05500 at 777.745 kb on - strand, within SGL_RS05500 at 777.845 kb on - strand, within SGL_RS05500 at 778.012 kb on + strand, within SGL_RS05500 at 778.012 kb on + strand, within SGL_RS05500 at 778.238 kb on - strand, within SGL_RS05500 at 778.321 kb on + strand, within SGL_RS05500 at 778.321 kb on + strand, within SGL_RS05500 at 778.328 kb on + strand, within SGL_RS05500 at 778.329 kb on - strand, within SGL_RS05500 at 778.418 kb on + strand, within SGL_RS05500 at 778.420 kb on + strand, within SGL_RS05500 at 778.598 kb on + strand, within SGL_RS05500 at 778.744 kb on - strand, within SGL_RS05500 at 778.853 kb on - strand, within SGL_RS05500 at 778.866 kb on - strand, within SGL_RS05500 at 778.908 kb on + strand, within SGL_RS05500 at 778.916 kb on + strand, within SGL_RS05500 at 779.031 kb on + strand, within SGL_RS05500 at 779.079 kb on - strand, within SGL_RS05500 at 779.216 kb on + strand at 779.229 kb on - strand at 779.295 kb on + strand at 779.313 kb on - strand at 779.487 kb on - strand at 779.516 kb on + strand at 779.665 kb on + strand at 779.730 kb on + strand at 779.730 kb on + strand at 779.730 kb on + strand at 779.730 kb on + strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.836 kb on + strand at 779.893 kb on - strand at 779.898 kb on - strand at 779.902 kb on + strand at 779.957 kb on + strand at 779.987 kb on - strand at 780.046 kb on + strand at 780.064 kb on - strand at 780.069 kb on - strand at 780.084 kb on - strand at 780.168 kb on + strand at 780.203 kb on + strand at 780.207 kb on - strand at 780.274 kb on - strand, within SGL_RS05505 at 780.282 kb on - strand, within SGL_RS05505 at 780.328 kb on - strand, within SGL_RS05505 at 780.345 kb on + strand, within SGL_RS05505 at 780.345 kb on + strand, within SGL_RS05505 at 780.353 kb on - strand, within SGL_RS05505
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 776,152 + SGL_RS05490 0.33 +1.1 776,285 + SGL_RS05490 0.80 +0.6 776,628 + SGL_RS05495 0.20 +0.6 776,628 + SGL_RS05495 0.20 +0.1 776,628 + SGL_RS05495 0.20 -0.3 776,636 - SGL_RS05495 0.22 +0.5 776,641 - SGL_RS05495 0.23 +0.8 776,736 - SGL_RS05495 0.48 -0.3 776,797 + SGL_RS05495 0.64 +0.1 777,055 + +0.7 777,247 - -6.0 777,366 + SGL_RS05500 0.13 -4.7 777,381 - SGL_RS05500 0.13 -5.7 777,682 + SGL_RS05500 0.26 -3.1 777,688 - SGL_RS05500 0.27 -4.3 777,688 - SGL_RS05500 0.27 -5.0 777,699 - SGL_RS05500 0.27 -1.0 777,707 + SGL_RS05500 0.27 -4.8 777,745 - SGL_RS05500 0.29 -2.2 777,845 - SGL_RS05500 0.33 -4.3 778,012 + SGL_RS05500 0.40 -2.8 778,012 + SGL_RS05500 0.40 -4.5 778,238 - SGL_RS05500 0.50 -4.4 778,321 + SGL_RS05500 0.53 -3.5 778,321 + SGL_RS05500 0.53 -2.8 778,328 + SGL_RS05500 0.54 -1.8 778,329 - SGL_RS05500 0.54 -4.9 778,418 + SGL_RS05500 0.58 -5.6 778,420 + SGL_RS05500 0.58 -2.0 778,598 + SGL_RS05500 0.65 -4.2 778,744 - SGL_RS05500 0.72 -5.5 778,853 - SGL_RS05500 0.76 -2.7 778,866 - SGL_RS05500 0.77 -1.8 778,908 + SGL_RS05500 0.79 -3.1 778,916 + SGL_RS05500 0.79 -4.2 779,031 + SGL_RS05500 0.84 -2.7 779,079 - SGL_RS05500 0.86 -2.5 779,216 + -3.4 779,229 - -4.9 779,295 + -2.5 779,313 - -1.0 779,487 - +0.0 779,516 + -4.8 779,665 + -3.2 779,730 + +0.4 779,730 + +0.5 779,730 + +1.1 779,730 + +0.2 779,738 - +0.2 779,738 - +0.4 779,738 - -0.2 779,738 - -0.1 779,738 - +0.1 779,836 + +0.7 779,893 - +0.2 779,898 - +0.2 779,902 + -0.9 779,957 + -0.4 779,987 - +0.0 780,046 + -0.0 780,064 - -0.9 780,069 - -0.1 780,084 - +0.2 780,168 + -0.8 780,203 + +0.1 780,207 - -3.7 780,274 - SGL_RS05505 0.13 +0.1 780,282 - SGL_RS05505 0.14 -0.6 780,328 - SGL_RS05505 0.17 -0.7 780,345 + SGL_RS05505 0.19 -1.1 780,345 + SGL_RS05505 0.19 -0.2 780,353 - SGL_RS05505 0.19 -0.5
Or see this region's nucleotide sequence