Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05455 and SGL_RS05460 overlap by 4 nucleotides SGL_RS05460 and SGL_RS05465 are separated by 39 nucleotides SGL_RS05465 and SGL_RS05470 are separated by 169 nucleotides
SGL_RS05455: SGL_RS05455 - radical SAM family heme chaperone HemW, at 769,053 to 770,291
_RS05455
SGL_RS05460: SGL_RS05460 - nicotinate-nucleotide adenylyltransferase, at 770,288 to 770,890
_RS05460
SGL_RS05465: SGL_RS05465 - hypothetical protein, at 770,930 to 771,481
_RS05465
SGL_RS05470: SGL_RS05470 - dihydropteroate synthase, at 771,651 to 772,520
_RS05470
Position (kb) 770
771
772 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 770.113 kb on - strand, within SGL_RS05455 at 770.391 kb on + strand, within SGL_RS05460 at 771.248 kb on - strand, within SGL_RS05465 at 771.265 kb on - strand, within SGL_RS05465 at 771.332 kb on - strand, within SGL_RS05465 at 771.351 kb on + strand, within SGL_RS05465 at 771.351 kb on + strand, within SGL_RS05465 at 771.426 kb on - strand at 771.547 kb on - strand at 771.566 kb on + strand at 771.574 kb on - strand at 771.597 kb on + strand at 771.648 kb on + strand at 771.663 kb on + strand at 771.710 kb on - strand at 771.769 kb on + strand, within SGL_RS05470 at 771.769 kb on + strand, within SGL_RS05470 at 771.831 kb on + strand, within SGL_RS05470 at 772.008 kb on + strand, within SGL_RS05470 at 772.085 kb on + strand, within SGL_RS05470 at 772.202 kb on - strand, within SGL_RS05470 at 772.290 kb on + strand, within SGL_RS05470 at 772.300 kb on + strand, within SGL_RS05470 at 772.399 kb on + strand, within SGL_RS05470
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 770,113 - SGL_RS05455 0.86 +1.4 770,391 + SGL_RS05460 0.17 -2.5 771,248 - SGL_RS05465 0.58 -3.6 771,265 - SGL_RS05465 0.61 -2.2 771,332 - SGL_RS05465 0.73 -3.1 771,351 + SGL_RS05465 0.76 -3.9 771,351 + SGL_RS05465 0.76 -2.5 771,426 - -3.5 771,547 - -0.4 771,566 + -1.3 771,574 - +0.6 771,597 + -1.4 771,648 + +0.8 771,663 + -0.4 771,710 - -4.0 771,769 + SGL_RS05470 0.14 -1.5 771,769 + SGL_RS05470 0.14 -1.8 771,831 + SGL_RS05470 0.21 -1.8 772,008 + SGL_RS05470 0.41 -1.2 772,085 + SGL_RS05470 0.50 -1.2 772,202 - SGL_RS05470 0.63 -3.3 772,290 + SGL_RS05470 0.73 -1.5 772,300 + SGL_RS05470 0.75 -2.9 772,399 + SGL_RS05470 0.86 -3.4
Or see this region's nucleotide sequence