Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05260 and SGL_RS05265 are separated by 186 nucleotides SGL_RS05265 and SGL_RS05270 are separated by 236 nucleotides SGL_RS05270 and SGL_RS05280 are separated by 73 nucleotides SGL_RS05280 and SGL_RS05285 are separated by 226 nucleotides
SGL_RS05260: SGL_RS05260 - hypothetical protein, at 728,660 to 729,484
_RS05260
SGL_RS05265: SGL_RS05265 - hypothetical protein, at 729,671 to 729,871
_RS05265
SGL_RS05270: SGL_RS05270 - serine/threonine-protein kinase, at 730,108 to 731,674
_RS05270
SGL_RS05280: SGL_RS05280 - hypothetical protein, at 731,748 to 732,191
_RS05280
SGL_RS05285: SGL_RS05285 - aspartoacylase, at 732,418 to 733,284
_RS05285
Position (kb) 730
731
732 Strain fitness (log2 ratio) -1
0
1
2
3 at 729.197 kb on - strand, within SGL_RS05260 at 729.291 kb on - strand, within SGL_RS05260 at 729.425 kb on + strand at 729.425 kb on + strand at 729.432 kb on + strand at 729.780 kb on - strand, within SGL_RS05265 at 729.800 kb on - strand, within SGL_RS05265 at 729.952 kb on + strand at 730.072 kb on + strand at 730.072 kb on + strand at 730.072 kb on + strand at 730.080 kb on - strand at 730.148 kb on - strand at 730.221 kb on + strand at 730.375 kb on - strand, within SGL_RS05270 at 730.402 kb on - strand, within SGL_RS05270 at 730.490 kb on - strand, within SGL_RS05270 at 730.876 kb on + strand, within SGL_RS05270 at 730.951 kb on - strand, within SGL_RS05270 at 730.953 kb on + strand, within SGL_RS05270 at 730.953 kb on + strand, within SGL_RS05270 at 731.036 kb on - strand, within SGL_RS05270 at 731.064 kb on - strand, within SGL_RS05270 at 731.073 kb on + strand, within SGL_RS05270 at 731.082 kb on - strand, within SGL_RS05270 at 731.287 kb on + strand, within SGL_RS05270 at 731.583 kb on + strand at 731.607 kb on - strand at 731.774 kb on + strand at 731.774 kb on + strand at 731.842 kb on - strand, within SGL_RS05280 at 731.933 kb on + strand, within SGL_RS05280 at 731.941 kb on - strand, within SGL_RS05280 at 731.943 kb on + strand, within SGL_RS05280 at 732.023 kb on - strand, within SGL_RS05280 at 732.023 kb on - strand, within SGL_RS05280 at 732.031 kb on - strand, within SGL_RS05280 at 732.119 kb on - strand, within SGL_RS05280 at 732.155 kb on - strand at 732.166 kb on + strand at 732.232 kb on - strand at 732.234 kb on - strand at 732.617 kb on + strand, within SGL_RS05285
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 729,197 - SGL_RS05260 0.65 -1.3 729,291 - SGL_RS05260 0.76 -1.0 729,425 + -0.9 729,425 + -0.1 729,432 + -1.3 729,780 - SGL_RS05265 0.54 +0.2 729,800 - SGL_RS05265 0.64 -0.2 729,952 + +0.8 730,072 + -0.1 730,072 + -0.1 730,072 + -0.1 730,080 - -0.1 730,148 - -0.2 730,221 + +2.3 730,375 - SGL_RS05270 0.17 +2.5 730,402 - SGL_RS05270 0.19 +2.5 730,490 - SGL_RS05270 0.24 +2.3 730,876 + SGL_RS05270 0.49 +2.6 730,951 - SGL_RS05270 0.54 +2.9 730,953 + SGL_RS05270 0.54 +1.6 730,953 + SGL_RS05270 0.54 +2.3 731,036 - SGL_RS05270 0.59 +2.6 731,064 - SGL_RS05270 0.61 +3.0 731,073 + SGL_RS05270 0.62 +2.6 731,082 - SGL_RS05270 0.62 +2.2 731,287 + SGL_RS05270 0.75 +2.3 731,583 + +2.6 731,607 - +2.0 731,774 + -0.5 731,774 + -1.0 731,842 - SGL_RS05280 0.21 +0.5 731,933 + SGL_RS05280 0.42 -0.2 731,941 - SGL_RS05280 0.43 +1.0 731,943 + SGL_RS05280 0.44 +0.8 732,023 - SGL_RS05280 0.62 +0.6 732,023 - SGL_RS05280 0.62 +0.2 732,031 - SGL_RS05280 0.64 +0.4 732,119 - SGL_RS05280 0.84 -0.3 732,155 - -1.1 732,166 + -0.3 732,232 - +0.1 732,234 - +0.2 732,617 + SGL_RS05285 0.23 +0.2
Or see this region's nucleotide sequence