Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04445 and SGL_RS04450 are separated by 269 nucleotides SGL_RS04450 and SGL_RS04455 are separated by 180 nucleotides SGL_RS04455 and SGL_RS04460 are separated by 211 nucleotides
SGL_RS04445: SGL_RS04445 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 553,297 to 554,019
_RS04445
SGL_RS04450: SGL_RS04450 - BolA family transcriptional regulator, at 554,289 to 554,546
_RS04450
SGL_RS04455: SGL_RS04455 - Grx4 family monothiol glutaredoxin, at 554,727 to 555,050
_RS04455
SGL_RS04460: SGL_RS04460 - YbaB/EbfC family nucleoid-associated protein, at 555,262 to 555,606
_RS04460
Position (kb) 554
555 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 553.340 kb on + strand at 553.348 kb on - strand at 553.370 kb on - strand, within SGL_RS04445 at 553.484 kb on + strand, within SGL_RS04445 at 553.492 kb on - strand, within SGL_RS04445 at 553.508 kb on + strand, within SGL_RS04445 at 553.516 kb on - strand, within SGL_RS04445 at 553.520 kb on + strand, within SGL_RS04445 at 553.576 kb on + strand, within SGL_RS04445 at 553.732 kb on + strand, within SGL_RS04445 at 553.732 kb on + strand, within SGL_RS04445 at 553.751 kb on - strand, within SGL_RS04445 at 553.810 kb on - strand, within SGL_RS04445 at 553.846 kb on + strand, within SGL_RS04445 at 553.849 kb on - strand, within SGL_RS04445 at 553.999 kb on + strand at 554.157 kb on - strand at 554.161 kb on + strand at 554.199 kb on + strand at 554.225 kb on - strand at 554.256 kb on + strand at 554.264 kb on - strand at 554.304 kb on - strand at 554.368 kb on - strand, within SGL_RS04450 at 554.386 kb on - strand, within SGL_RS04450 at 554.417 kb on + strand, within SGL_RS04450 at 554.432 kb on + strand, within SGL_RS04450 at 554.524 kb on - strand at 554.524 kb on - strand at 554.715 kb on + strand at 554.797 kb on + strand, within SGL_RS04455 at 554.948 kb on + strand, within SGL_RS04455 at 554.985 kb on - strand, within SGL_RS04455 at 554.997 kb on - strand, within SGL_RS04455 at 555.053 kb on - strand at 555.079 kb on - strand at 555.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 553,340 + -4.7 553,348 - -5.9 553,370 - SGL_RS04445 0.10 -5.8 553,484 + SGL_RS04445 0.26 +0.4 553,492 - SGL_RS04445 0.27 -0.4 553,508 + SGL_RS04445 0.29 +0.0 553,516 - SGL_RS04445 0.30 -1.0 553,520 + SGL_RS04445 0.31 -0.3 553,576 + SGL_RS04445 0.39 -0.8 553,732 + SGL_RS04445 0.60 +0.2 553,732 + SGL_RS04445 0.60 -0.0 553,751 - SGL_RS04445 0.63 +0.4 553,810 - SGL_RS04445 0.71 -0.2 553,846 + SGL_RS04445 0.76 +0.6 553,849 - SGL_RS04445 0.76 +0.4 553,999 + -1.0 554,157 - +0.3 554,161 + -1.0 554,199 + -0.4 554,225 - +0.3 554,256 + +1.9 554,264 - -0.1 554,304 - +1.1 554,368 - SGL_RS04450 0.31 +1.7 554,386 - SGL_RS04450 0.38 +0.9 554,417 + SGL_RS04450 0.50 +0.5 554,432 + SGL_RS04450 0.55 +0.6 554,524 - +1.3 554,524 - -0.2 554,715 + +1.0 554,797 + SGL_RS04455 0.22 +1.5 554,948 + SGL_RS04455 0.68 +1.1 554,985 - SGL_RS04455 0.80 +0.6 554,997 - SGL_RS04455 0.83 +1.3 555,053 - +0.1 555,079 - -0.7 555,252 + -5.7
Or see this region's nucleotide sequence