Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03655

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03645 and SGL_RS03650 are separated by 63 nucleotidesSGL_RS03650 and SGL_RS03655 are separated by 9 nucleotidesSGL_RS03655 and SGL_RS03660 are separated by 134 nucleotidesSGL_RS03660 and SGL_RS03665 are separated by 17 nucleotides SGL_RS03645: SGL_RS03645 - FkbM family methyltransferase, at 372,811 to 373,167 _RS03645 SGL_RS03650: SGL_RS03650 - FkbM family methyltransferase, at 373,231 to 373,644 _RS03650 SGL_RS03655: SGL_RS03655 - glycosyltransferase family 2 protein, at 373,654 to 374,511 _RS03655 SGL_RS03660: SGL_RS03660 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 374,646 to 375,452 _RS03660 SGL_RS03665: SGL_RS03665 - GDP-mannose 4,6-dehydratase, at 375,470 to 376,432 _RS03665 Position (kb) 373 374 375Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 373.147 kb on - strandat 373.582 kb on - strand, within SGL_RS03650at 374.050 kb on + strand, within SGL_RS03655at 374.055 kb on + strand, within SGL_RS03655at 374.063 kb on - strand, within SGL_RS03655at 374.098 kb on + strand, within SGL_RS03655at 374.294 kb on - strand, within SGL_RS03655at 374.546 kb on + strandat 375.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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373,147 - +0.5
373,582 - SGL_RS03650 0.85 +0.7
374,050 + SGL_RS03655 0.46 -5.5
374,055 + SGL_RS03655 0.47 -5.9
374,063 - SGL_RS03655 0.48 -5.3
374,098 + SGL_RS03655 0.52 -5.5
374,294 - SGL_RS03655 0.75 -6.3
374,546 + +0.6
375,389 - +1.2

Or see this region's nucleotide sequence