Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03600 and SGL_RS03605 are separated by 202 nucleotides SGL_RS03605 and SGL_RS03610 are separated by 80 nucleotides SGL_RS03610 and SGL_RS03615 overlap by 10 nucleotides SGL_RS03615 and SGL_RS03620 are separated by 94 nucleotides
SGL_RS03600: SGL_RS03600 - class I SAM-dependent methyltransferase, at 363,490 to 364,218
_RS03600
SGL_RS03605: SGL_RS03605 - cephalosporin hydroxylase family protein, at 364,421 to 364,996
_RS03605
SGL_RS03610: SGL_RS03610 - hypothetical protein, at 365,077 to 365,283
_RS03610
SGL_RS03615: SGL_RS03615 - type II toxin-antitoxin system PemK/MazF family toxin, at 365,274 to 365,621
_RS03615
SGL_RS03620: SGL_RS03620 - glycosyltransferase, at 365,716 to 367,785
_RS03620
Position (kb) 364
365 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 363.552 kb on - strand at 364.062 kb on - strand, within SGL_RS03600 at 364.102 kb on + strand, within SGL_RS03600 at 364.350 kb on - strand at 364.385 kb on - strand at 364.425 kb on - strand at 364.457 kb on + strand at 364.523 kb on - strand, within SGL_RS03605 at 364.686 kb on - strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.783 kb on - strand, within SGL_RS03605 at 364.783 kb on - strand, within SGL_RS03605 at 364.855 kb on + strand, within SGL_RS03605 at 364.863 kb on - strand, within SGL_RS03605 at 364.870 kb on + strand, within SGL_RS03605 at 364.876 kb on + strand, within SGL_RS03605 at 365.214 kb on - strand, within SGL_RS03610 at 365.278 kb on + strand at 365.405 kb on - strand, within SGL_RS03615 at 365.410 kb on + strand, within SGL_RS03615
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 363,552 - -5.8 364,062 - SGL_RS03600 0.78 -3.4 364,102 + SGL_RS03600 0.84 -2.1 364,350 - -6.0 364,385 - -8.1 364,425 - -1.9 364,457 + -4.4 364,523 - SGL_RS03605 0.18 -3.4 364,686 - SGL_RS03605 0.46 -5.9 364,775 + SGL_RS03605 0.61 -3.7 364,775 + SGL_RS03605 0.61 -6.4 364,775 + SGL_RS03605 0.61 -4.1 364,775 + SGL_RS03605 0.61 -4.6 364,783 - SGL_RS03605 0.63 -5.3 364,783 - SGL_RS03605 0.63 -8.1 364,855 + SGL_RS03605 0.75 -5.1 364,863 - SGL_RS03605 0.77 -4.2 364,870 + SGL_RS03605 0.78 -6.1 364,876 + SGL_RS03605 0.79 -6.2 365,214 - SGL_RS03610 0.66 +0.1 365,278 + -0.2 365,405 - SGL_RS03615 0.38 +1.0 365,410 + SGL_RS03615 0.39 +0.3
Or see this region's nucleotide sequence