Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03085

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03080 and SGL_RS19410 are separated by 20 nucleotidesSGL_RS19410 and SGL_RS03085 are separated by 60 nucleotidesSGL_RS03085 and SGL_RS03090 are separated by 116 nucleotides SGL_RS03080: SGL_RS03080 - transaldolase, at 260,463 to 261,638 _RS03080 SGL_RS19410: SGL_RS19410 - hypothetical protein, at 261,659 to 261,802 _RS19410 SGL_RS03085: SGL_RS03085 - DUF2862 domain-containing protein, at 261,863 to 262,060 _RS03085 SGL_RS03090: SGL_RS03090 - ArsA family ATPase, at 262,177 to 263,265 _RS03090 Position (kb) 261 262 263Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 261.192 kb on - strand, within SGL_RS03080at 261.265 kb on + strand, within SGL_RS03080at 261.276 kb on + strand, within SGL_RS03080at 261.278 kb on - strand, within SGL_RS03080at 261.310 kb on - strand, within SGL_RS03080at 261.310 kb on - strand, within SGL_RS03080at 261.395 kb on - strand, within SGL_RS03080at 261.447 kb on - strand, within SGL_RS03080at 261.518 kb on + strand, within SGL_RS03080at 261.526 kb on - strandat 261.537 kb on - strandat 261.703 kb on - strand, within SGL_RS19410at 261.743 kb on + strand, within SGL_RS19410at 261.748 kb on + strand, within SGL_RS19410at 261.876 kb on - strandat 262.005 kb on + strand, within SGL_RS03085at 262.013 kb on - strand, within SGL_RS03085at 262.067 kb on + strandat 262.219 kb on - strandat 262.269 kb on + strandat 262.271 kb on + strandat 262.272 kb on - strandat 262.282 kb on - strandat 262.315 kb on + strand, within SGL_RS03090at 262.322 kb on - strand, within SGL_RS03090at 262.324 kb on - strand, within SGL_RS03090at 262.336 kb on + strand, within SGL_RS03090at 262.384 kb on - strand, within SGL_RS03090at 262.392 kb on + strand, within SGL_RS03090at 262.478 kb on - strand, within SGL_RS03090at 262.509 kb on + strand, within SGL_RS03090at 262.576 kb on - strand, within SGL_RS03090at 262.586 kb on - strand, within SGL_RS03090at 262.666 kb on + strand, within SGL_RS03090at 262.727 kb on - strand, within SGL_RS03090at 262.781 kb on + strand, within SGL_RS03090at 262.877 kb on + strand, within SGL_RS03090at 263.008 kb on + strand, within SGL_RS03090at 263.025 kb on + strand, within SGL_RS03090at 263.025 kb on + strand, within SGL_RS03090

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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261,192 - SGL_RS03080 0.62 +0.1
261,265 + SGL_RS03080 0.68 +0.1
261,276 + SGL_RS03080 0.69 +0.3
261,278 - SGL_RS03080 0.69 +0.5
261,310 - SGL_RS03080 0.72 +0.9
261,310 - SGL_RS03080 0.72 -0.0
261,395 - SGL_RS03080 0.79 -0.4
261,447 - SGL_RS03080 0.84 -0.4
261,518 + SGL_RS03080 0.90 +0.0
261,526 - +0.5
261,537 - +0.9
261,703 - SGL_RS19410 0.31 -2.1
261,743 + SGL_RS19410 0.58 -0.5
261,748 + SGL_RS19410 0.62 +0.3
261,876 - -5.9
262,005 + SGL_RS03085 0.72 -7.2
262,013 - SGL_RS03085 0.76 -3.2
262,067 + -0.2
262,219 - -4.5
262,269 + -3.2
262,271 + -3.0
262,272 - -5.6
262,282 - -3.0
262,315 + SGL_RS03090 0.13 -4.2
262,322 - SGL_RS03090 0.13 -3.8
262,324 - SGL_RS03090 0.13 -2.3
262,336 + SGL_RS03090 0.15 -3.3
262,384 - SGL_RS03090 0.19 -3.7
262,392 + SGL_RS03090 0.20 -3.6
262,478 - SGL_RS03090 0.28 -3.2
262,509 + SGL_RS03090 0.30 -3.2
262,576 - SGL_RS03090 0.37 -2.6
262,586 - SGL_RS03090 0.38 -2.0
262,666 + SGL_RS03090 0.45 -3.9
262,727 - SGL_RS03090 0.51 -3.0
262,781 + SGL_RS03090 0.55 -2.0
262,877 + SGL_RS03090 0.64 -2.4
263,008 + SGL_RS03090 0.76 -3.1
263,025 + SGL_RS03090 0.78 -2.5
263,025 + SGL_RS03090 0.78 -2.3

Or see this region's nucleotide sequence