Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02835 and SGL_RS02840 are separated by 156 nucleotides SGL_RS02840 and SGL_RS02845 are separated by 99 nucleotides SGL_RS02845 and SGL_RS02850 are separated by 69 nucleotides
SGL_RS02835: SGL_RS02835 - TAXI family TRAP transporter solute-binding subunit, at 206,863 to 208,392
_RS02835
SGL_RS02840: SGL_RS02840 - MBL fold metallo-hydrolase, at 208,549 to 209,427
_RS02840
SGL_RS02845: SGL_RS02845 - thylakoid membrane protein, at 209,527 to 209,826
_RS02845
SGL_RS02850: SGL_RS02850 - uracil phosphoribosyltransferase, at 209,896 to 210,546
_RS02850
Position (kb) 208
209
210 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 207.780 kb on - strand, within SGL_RS02835 at 208.194 kb on + strand, within SGL_RS02835 at 208.348 kb on - strand at 208.473 kb on + strand at 209.094 kb on - strand, within SGL_RS02840 at 209.134 kb on + strand, within SGL_RS02840 at 209.144 kb on + strand, within SGL_RS02840 at 209.337 kb on + strand, within SGL_RS02840 at 209.362 kb on - strand at 209.366 kb on + strand at 209.378 kb on + strand at 209.477 kb on - strand at 209.494 kb on - strand at 209.517 kb on - strand at 209.573 kb on + strand, within SGL_RS02845 at 209.727 kb on - strand, within SGL_RS02845 at 209.924 kb on + strand at 209.933 kb on - strand at 209.950 kb on - strand at 209.950 kb on - strand at 210.066 kb on - strand, within SGL_RS02850 at 210.102 kb on - strand, within SGL_RS02850 at 210.270 kb on - strand, within SGL_RS02850 at 210.341 kb on - strand, within SGL_RS02850 at 210.415 kb on - strand, within SGL_RS02850
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 207,780 - SGL_RS02835 0.60 +0.5 208,194 + SGL_RS02835 0.87 +0.2 208,348 - -0.7 208,473 + +0.8 209,094 - SGL_RS02840 0.62 -1.8 209,134 + SGL_RS02840 0.67 -3.0 209,144 + SGL_RS02840 0.68 -1.8 209,337 + SGL_RS02840 0.90 -5.6 209,362 - -2.6 209,366 + -2.2 209,378 + -5.6 209,477 - +0.1 209,494 - +0.8 209,517 - -1.5 209,573 + SGL_RS02845 0.15 -0.4 209,727 - SGL_RS02845 0.67 -1.6 209,924 + -3.3 209,933 - -3.0 209,950 - -4.8 209,950 - -5.2 210,066 - SGL_RS02850 0.26 -4.8 210,102 - SGL_RS02850 0.32 -4.2 210,270 - SGL_RS02850 0.57 -2.7 210,341 - SGL_RS02850 0.68 -5.3 210,415 - SGL_RS02850 0.80 -5.3
Or see this region's nucleotide sequence