Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02735 and SGL_RS02740 are separated by 43 nucleotides SGL_RS02740 and SGL_RS02745 are separated by 135 nucleotides SGL_RS02745 and SGL_RS02750 are separated by 46 nucleotides
SGL_RS02735: SGL_RS02735 - DMT family transporter, at 183,935 to 184,924
_RS02735
SGL_RS02740: SGL_RS02740 - HAS-barrel domain-containing protein, at 184,968 to 185,636
_RS02740
SGL_RS02745: SGL_RS02745 - ABC transporter ATP-binding protein, at 185,772 to 186,554
_RS02745
SGL_RS02750: SGL_RS02750 - mechanosensitive ion channel family protein, at 186,601 to 188,892
_RS02750
Position (kb) 184
185
186 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 184.258 kb on + strand, within SGL_RS02735 at 184.286 kb on + strand, within SGL_RS02735 at 184.338 kb on - strand, within SGL_RS02735 at 184.355 kb on + strand, within SGL_RS02735 at 184.542 kb on + strand, within SGL_RS02735 at 184.771 kb on + strand, within SGL_RS02735 at 184.988 kb on + strand at 185.047 kb on + strand, within SGL_RS02740 at 185.048 kb on + strand, within SGL_RS02740 at 185.117 kb on + strand, within SGL_RS02740 at 185.296 kb on - strand, within SGL_RS02740 at 185.387 kb on + strand, within SGL_RS02740 at 185.474 kb on - strand, within SGL_RS02740 at 186.019 kb on - strand, within SGL_RS02745 at 186.019 kb on - strand, within SGL_RS02745 at 186.076 kb on - strand, within SGL_RS02745 at 186.093 kb on + strand, within SGL_RS02745 at 186.100 kb on - strand, within SGL_RS02745 at 186.233 kb on + strand, within SGL_RS02745 at 186.265 kb on + strand, within SGL_RS02745 at 186.381 kb on + strand, within SGL_RS02745 at 186.389 kb on - strand, within SGL_RS02745 at 186.470 kb on + strand, within SGL_RS02745 at 186.512 kb on - strand at 186.524 kb on + strand at 186.539 kb on + strand at 186.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 184,258 + SGL_RS02735 0.33 -0.3 184,286 + SGL_RS02735 0.35 +0.7 184,338 - SGL_RS02735 0.41 +0.3 184,355 + SGL_RS02735 0.42 -0.1 184,542 + SGL_RS02735 0.61 -0.5 184,771 + SGL_RS02735 0.84 +0.4 184,988 + -5.7 185,047 + SGL_RS02740 0.12 -6.0 185,048 + SGL_RS02740 0.12 -4.9 185,117 + SGL_RS02740 0.22 -2.5 185,296 - SGL_RS02740 0.49 -3.0 185,387 + SGL_RS02740 0.63 -4.4 185,474 - SGL_RS02740 0.76 -4.5 186,019 - SGL_RS02745 0.32 -3.2 186,019 - SGL_RS02745 0.32 -1.3 186,076 - SGL_RS02745 0.39 -0.8 186,093 + SGL_RS02745 0.41 -3.1 186,100 - SGL_RS02745 0.42 -3.5 186,233 + SGL_RS02745 0.59 -0.1 186,265 + SGL_RS02745 0.63 -1.5 186,381 + SGL_RS02745 0.78 -1.8 186,389 - SGL_RS02745 0.79 -0.9 186,470 + SGL_RS02745 0.89 -0.1 186,512 - -2.7 186,524 + -0.3 186,539 + -0.1 186,604 + -0.3
Or see this region's nucleotide sequence