Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02365 and SGL_RS02370 are separated by 249 nucleotides SGL_RS02370 and SGL_RS02375 overlap by 4 nucleotides SGL_RS02375 and SGL_RS02380 are separated by 40 nucleotides
SGL_RS02365: SGL_RS02365 - DUF3181 family protein, at 114,319 to 114,624
_RS02365
SGL_RS02370: SGL_RS02370 - DUF3119 family protein, at 114,874 to 115,272
_RS02370
SGL_RS02375: SGL_RS02375 - DUF3086 domain-containing protein, at 115,269 to 116,477
_RS02375
SGL_RS02380: SGL_RS02380 - cysteine desulfurase family protein, at 116,518 to 117,693
_RS02380
Position (kb) 115
116
117 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 114.339 kb on - strand at 114.494 kb on - strand, within SGL_RS02365 at 114.713 kb on - strand at 114.788 kb on + strand at 114.856 kb on + strand at 114.856 kb on + strand at 114.884 kb on + strand at 114.978 kb on + strand, within SGL_RS02370 at 115.049 kb on + strand, within SGL_RS02370 at 115.415 kb on + strand, within SGL_RS02375 at 115.512 kb on + strand, within SGL_RS02375 at 115.586 kb on + strand, within SGL_RS02375 at 115.586 kb on + strand, within SGL_RS02375 at 116.035 kb on + strand, within SGL_RS02375 at 116.064 kb on - strand, within SGL_RS02375 at 116.089 kb on + strand, within SGL_RS02375 at 116.148 kb on - strand, within SGL_RS02375 at 116.168 kb on + strand, within SGL_RS02375 at 116.176 kb on - strand, within SGL_RS02375 at 116.279 kb on - strand, within SGL_RS02375 at 116.523 kb on - strand at 116.652 kb on - strand, within SGL_RS02380 at 116.681 kb on - strand, within SGL_RS02380 at 116.794 kb on + strand, within SGL_RS02380 at 116.877 kb on + strand, within SGL_RS02380 at 116.898 kb on - strand, within SGL_RS02380 at 117.015 kb on - strand, within SGL_RS02380 at 117.065 kb on + strand, within SGL_RS02380 at 117.107 kb on - strand, within SGL_RS02380 at 117.130 kb on - strand, within SGL_RS02380 at 117.173 kb on + strand, within SGL_RS02380 at 117.233 kb on - strand, within SGL_RS02380 at 117.319 kb on + strand, within SGL_RS02380 at 117.319 kb on + strand, within SGL_RS02380 at 117.333 kb on + strand, within SGL_RS02380 at 117.385 kb on + strand, within SGL_RS02380
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 114,339 - -0.8 114,494 - SGL_RS02365 0.57 +0.4 114,713 - -0.1 114,788 + -0.5 114,856 + -0.6 114,856 + +0.3 114,884 + +0.5 114,978 + SGL_RS02370 0.26 -0.9 115,049 + SGL_RS02370 0.44 +0.4 115,415 + SGL_RS02375 0.12 -5.9 115,512 + SGL_RS02375 0.20 -4.5 115,586 + SGL_RS02375 0.26 -4.0 115,586 + SGL_RS02375 0.26 -2.6 116,035 + SGL_RS02375 0.63 -5.8 116,064 - SGL_RS02375 0.66 -4.2 116,089 + SGL_RS02375 0.68 -5.7 116,148 - SGL_RS02375 0.73 -5.2 116,168 + SGL_RS02375 0.74 -3.6 116,176 - SGL_RS02375 0.75 -4.8 116,279 - SGL_RS02375 0.84 -5.7 116,523 - +0.1 116,652 - SGL_RS02380 0.11 +0.7 116,681 - SGL_RS02380 0.14 +0.6 116,794 + SGL_RS02380 0.23 +0.8 116,877 + SGL_RS02380 0.31 +0.6 116,898 - SGL_RS02380 0.32 +0.5 117,015 - SGL_RS02380 0.42 +1.3 117,065 + SGL_RS02380 0.47 +0.2 117,107 - SGL_RS02380 0.50 +1.1 117,130 - SGL_RS02380 0.52 +0.6 117,173 + SGL_RS02380 0.56 +0.0 117,233 - SGL_RS02380 0.61 +0.2 117,319 + SGL_RS02380 0.68 +0.8 117,319 + SGL_RS02380 0.68 +0.7 117,333 + SGL_RS02380 0.69 +0.1 117,385 + SGL_RS02380 0.74 +0.8
Or see this region's nucleotide sequence