Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02135 and SGL_RS02140 are separated by 72 nucleotides SGL_RS02140 and SGL_RS02145 are separated by 78 nucleotides SGL_RS02145 and SGL_RS02150 are separated by 72 nucleotides SGL_RS02150 and SGL_RS02155 are separated by 38 nucleotides
SGL_RS02135: SGL_RS02135 - DinB family protein, at 64,393 to 64,914
_RS02135
SGL_RS02140: SGL_RS02140 - class I SAM-dependent methyltransferase, at 64,987 to 65,748
_RS02140
SGL_RS02145: SGL_RS02145 - metallophosphoesterase, at 65,827 to 67,533
_RS02145
SGL_RS02150: SGL_RS02150 - WecB/TagA/CpsF family glycosyltransferase, at 67,606 to 68,361
_RS02150
SGL_RS02155: SGL_RS02155 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 68,400 to 69,059
_RS02155
Position (kb) 65
66
67
68 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 64.828 kb on - strand, within SGL_RS02135 at 65.031 kb on + strand at 65.044 kb on - strand at 65.333 kb on - strand, within SGL_RS02140 at 65.464 kb on - strand, within SGL_RS02140 at 65.589 kb on + strand, within SGL_RS02140 at 65.651 kb on - strand, within SGL_RS02140 at 65.973 kb on - strand at 66.025 kb on + strand, within SGL_RS02145 at 66.329 kb on + strand, within SGL_RS02145 at 66.337 kb on - strand, within SGL_RS02145 at 66.337 kb on - strand, within SGL_RS02145 at 66.545 kb on - strand, within SGL_RS02145 at 66.592 kb on - strand, within SGL_RS02145 at 66.671 kb on - strand, within SGL_RS02145 at 66.752 kb on - strand, within SGL_RS02145 at 66.757 kb on - strand, within SGL_RS02145 at 66.785 kb on + strand, within SGL_RS02145 at 66.785 kb on + strand, within SGL_RS02145 at 66.829 kb on - strand, within SGL_RS02145 at 66.835 kb on + strand, within SGL_RS02145 at 66.877 kb on - strand, within SGL_RS02145 at 66.972 kb on - strand, within SGL_RS02145 at 66.999 kb on + strand, within SGL_RS02145 at 67.043 kb on - strand, within SGL_RS02145 at 67.087 kb on - strand, within SGL_RS02145 at 67.163 kb on - strand, within SGL_RS02145 at 67.166 kb on + strand, within SGL_RS02145 at 67.200 kb on - strand, within SGL_RS02145 at 67.260 kb on - strand, within SGL_RS02145 at 67.322 kb on + strand, within SGL_RS02145 at 67.330 kb on - strand, within SGL_RS02145 at 67.330 kb on - strand, within SGL_RS02145 at 67.330 kb on - strand, within SGL_RS02145 at 67.399 kb on + strand at 67.399 kb on + strand at 67.406 kb on + strand at 67.463 kb on - strand at 67.657 kb on + strand at 67.660 kb on - strand at 67.786 kb on + strand, within SGL_RS02150 at 67.794 kb on - strand, within SGL_RS02150 at 67.823 kb on + strand, within SGL_RS02150 at 67.838 kb on + strand, within SGL_RS02150 at 67.850 kb on + strand, within SGL_RS02150 at 68.167 kb on + strand, within SGL_RS02150 at 68.528 kb on + strand, within SGL_RS02155
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 64,828 - SGL_RS02135 0.83 +0.6 65,031 + +0.2 65,044 - +0.7 65,333 - SGL_RS02140 0.45 +0.2 65,464 - SGL_RS02140 0.63 +0.0 65,589 + SGL_RS02140 0.79 -0.6 65,651 - SGL_RS02140 0.87 -0.6 65,973 - -4.1 66,025 + SGL_RS02145 0.12 -4.8 66,329 + SGL_RS02145 0.29 -3.9 66,337 - SGL_RS02145 0.30 -5.2 66,337 - SGL_RS02145 0.30 -5.0 66,545 - SGL_RS02145 0.42 -3.3 66,592 - SGL_RS02145 0.45 -5.5 66,671 - SGL_RS02145 0.49 -4.6 66,752 - SGL_RS02145 0.54 -5.1 66,757 - SGL_RS02145 0.54 -0.9 66,785 + SGL_RS02145 0.56 -2.1 66,785 + SGL_RS02145 0.56 -3.4 66,829 - SGL_RS02145 0.59 -3.9 66,835 + SGL_RS02145 0.59 -5.4 66,877 - SGL_RS02145 0.62 -4.7 66,972 - SGL_RS02145 0.67 -2.6 66,999 + SGL_RS02145 0.69 -3.0 67,043 - SGL_RS02145 0.71 -4.6 67,087 - SGL_RS02145 0.74 -5.1 67,163 - SGL_RS02145 0.78 -3.2 67,166 + SGL_RS02145 0.78 -3.0 67,200 - SGL_RS02145 0.80 -2.7 67,260 - SGL_RS02145 0.84 -0.3 67,322 + SGL_RS02145 0.88 -5.9 67,330 - SGL_RS02145 0.88 -4.5 67,330 - SGL_RS02145 0.88 -4.3 67,330 - SGL_RS02145 0.88 -4.1 67,399 + -5.2 67,399 + -1.9 67,406 + -3.6 67,463 - -1.4 67,657 + +0.2 67,660 - -1.2 67,786 + SGL_RS02150 0.24 -0.2 67,794 - SGL_RS02150 0.25 -0.3 67,823 + SGL_RS02150 0.29 -0.7 67,838 + SGL_RS02150 0.31 +0.8 67,850 + SGL_RS02150 0.32 +0.3 68,167 + SGL_RS02150 0.74 +1.1 68,528 + SGL_RS02155 0.19 +1.3
Or see this region's nucleotide sequence