Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00220

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00215 and SGL_RS00220 are separated by 4 nucleotidesSGL_RS00220 and SGL_RS00225 are separated by 2 nucleotides SGL_RS00215: SGL_RS00215 - glycosyltransferase family 4 protein, at 45,852 to 46,940 _RS00215 SGL_RS00220: SGL_RS00220 - oligosaccharide flippase family protein, at 46,945 to 48,288 _RS00220 SGL_RS00225: SGL_RS00225 - glycosyltransferase, at 48,291 to 49,505 _RS00225 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 45.974 kb on + strand, within SGL_RS00215at 46.031 kb on - strand, within SGL_RS00215at 46.076 kb on - strand, within SGL_RS00215at 46.097 kb on + strand, within SGL_RS00215at 46.145 kb on - strand, within SGL_RS00215at 46.156 kb on + strand, within SGL_RS00215at 46.164 kb on + strand, within SGL_RS00215at 46.363 kb on - strand, within SGL_RS00215at 46.414 kb on + strand, within SGL_RS00215at 46.432 kb on + strand, within SGL_RS00215at 46.443 kb on - strand, within SGL_RS00215at 46.455 kb on - strand, within SGL_RS00215at 46.518 kb on - strand, within SGL_RS00215at 46.578 kb on + strand, within SGL_RS00215at 46.578 kb on - strand, within SGL_RS00215at 46.735 kb on - strand, within SGL_RS00215at 46.899 kb on - strandat 46.917 kb on + strandat 46.925 kb on - strandat 47.089 kb on - strand, within SGL_RS00220at 47.214 kb on + strand, within SGL_RS00220at 47.268 kb on + strand, within SGL_RS00220at 47.305 kb on + strand, within SGL_RS00220at 47.366 kb on - strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.439 kb on + strand, within SGL_RS00220at 47.457 kb on - strand, within SGL_RS00220at 47.479 kb on + strand, within SGL_RS00220at 47.511 kb on - strand, within SGL_RS00220at 47.518 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.540 kb on - strand, within SGL_RS00220at 47.554 kb on - strand, within SGL_RS00220at 47.625 kb on - strand, within SGL_RS00220at 47.817 kb on + strand, within SGL_RS00220at 47.852 kb on + strand, within SGL_RS00220at 47.905 kb on - strand, within SGL_RS00220at 48.012 kb on + strand, within SGL_RS00220at 48.012 kb on + strand, within SGL_RS00220at 48.020 kb on - strand, within SGL_RS00220at 48.027 kb on - strand, within SGL_RS00220at 48.045 kb on - strand, within SGL_RS00220at 48.140 kb on + strand, within SGL_RS00220at 48.159 kb on + strandat 48.376 kb on - strandat 48.394 kb on + strandat 48.416 kb on + strand, within SGL_RS00225at 48.425 kb on - strand, within SGL_RS00225at 48.451 kb on + strand, within SGL_RS00225at 48.459 kb on - strand, within SGL_RS00225at 48.465 kb on - strand, within SGL_RS00225at 48.467 kb on + strand, within SGL_RS00225at 48.493 kb on - strand, within SGL_RS00225at 48.500 kb on + strand, within SGL_RS00225at 48.508 kb on + strand, within SGL_RS00225at 48.531 kb on - strand, within SGL_RS00225at 48.567 kb on - strand, within SGL_RS00225at 48.570 kb on + strand, within SGL_RS00225at 48.676 kb on + strand, within SGL_RS00225at 48.754 kb on + strand, within SGL_RS00225at 48.891 kb on + strand, within SGL_RS00225at 48.927 kb on + strand, within SGL_RS00225at 48.968 kb on - strand, within SGL_RS00225at 49.024 kb on - strand, within SGL_RS00225at 49.078 kb on - strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.086 kb on + strand, within SGL_RS00225at 49.099 kb on + strand, within SGL_RS00225at 49.210 kb on - strand, within SGL_RS00225at 49.212 kb on + strand, within SGL_RS00225at 49.248 kb on + strand, within SGL_RS00225at 49.248 kb on + strand, within SGL_RS00225at 49.264 kb on - strand, within SGL_RS00225at 49.266 kb on - strand, within SGL_RS00225

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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45,974 + SGL_RS00215 0.11 -2.8
46,031 - SGL_RS00215 0.16 -1.7
46,076 - SGL_RS00215 0.21 -2.6
46,097 + SGL_RS00215 0.22 -2.2
46,145 - SGL_RS00215 0.27 -3.1
46,156 + SGL_RS00215 0.28 -1.6
46,164 + SGL_RS00215 0.29 -1.3
46,363 - SGL_RS00215 0.47 -2.5
46,414 + SGL_RS00215 0.52 -1.8
46,432 + SGL_RS00215 0.53 -1.9
46,443 - SGL_RS00215 0.54 -2.9
46,455 - SGL_RS00215 0.55 -1.3
46,518 - SGL_RS00215 0.61 -2.4
46,578 + SGL_RS00215 0.67 -2.2
46,578 - SGL_RS00215 0.67 -2.3
46,735 - SGL_RS00215 0.81 -2.7
46,899 - -3.4
46,917 + -1.4
46,925 - -1.3
47,089 - SGL_RS00220 0.11 -3.4
47,214 + SGL_RS00220 0.20 -3.5
47,268 + SGL_RS00220 0.24 -6.9
47,305 + SGL_RS00220 0.27 -6.3
47,366 - SGL_RS00220 0.31 -7.4
47,378 + SGL_RS00220 0.32 -7.1
47,378 + SGL_RS00220 0.32 -6.9
47,378 + SGL_RS00220 0.32 -7.5
47,439 + SGL_RS00220 0.37 -4.0
47,457 - SGL_RS00220 0.38 -2.9
47,479 + SGL_RS00220 0.40 -7.3
47,511 - SGL_RS00220 0.42 -7.0
47,518 + SGL_RS00220 0.43 -7.2
47,532 + SGL_RS00220 0.44 -4.6
47,532 + SGL_RS00220 0.44 -5.2
47,540 - SGL_RS00220 0.44 -7.0
47,554 - SGL_RS00220 0.45 -8.2
47,625 - SGL_RS00220 0.51 -3.3
47,817 + SGL_RS00220 0.65 -6.1
47,852 + SGL_RS00220 0.67 -5.2
47,905 - SGL_RS00220 0.71 -4.6
48,012 + SGL_RS00220 0.79 -6.8
48,012 + SGL_RS00220 0.79 -6.6
48,020 - SGL_RS00220 0.80 -5.4
48,027 - SGL_RS00220 0.81 -4.7
48,045 - SGL_RS00220 0.82 -6.4
48,140 + SGL_RS00220 0.89 -6.0
48,159 + -6.6
48,376 - -6.3
48,394 + -4.4
48,416 + SGL_RS00225 0.10 -7.0
48,425 - SGL_RS00225 0.11 -5.9
48,451 + SGL_RS00225 0.13 -7.3
48,459 - SGL_RS00225 0.14 -4.0
48,465 - SGL_RS00225 0.14 -5.6
48,467 + SGL_RS00225 0.14 -5.2
48,493 - SGL_RS00225 0.17 -7.8
48,500 + SGL_RS00225 0.17 -5.2
48,508 + SGL_RS00225 0.18 -4.1
48,531 - SGL_RS00225 0.20 -7.0
48,567 - SGL_RS00225 0.23 -6.4
48,570 + SGL_RS00225 0.23 -5.6
48,676 + SGL_RS00225 0.32 -6.5
48,754 + SGL_RS00225 0.38 -6.6
48,891 + SGL_RS00225 0.49 -5.8
48,927 + SGL_RS00225 0.52 -5.5
48,968 - SGL_RS00225 0.56 -6.6
49,024 - SGL_RS00225 0.60 -3.5
49,078 - SGL_RS00225 0.65 -6.5
49,086 + SGL_RS00225 0.65 -7.3
49,086 + SGL_RS00225 0.65 -4.3
49,086 + SGL_RS00225 0.65 -6.6
49,086 + SGL_RS00225 0.65 -4.2
49,099 + SGL_RS00225 0.67 -5.9
49,210 - SGL_RS00225 0.76 -4.5
49,212 + SGL_RS00225 0.76 -1.4
49,248 + SGL_RS00225 0.79 -6.7
49,248 + SGL_RS00225 0.79 -7.3
49,264 - SGL_RS00225 0.80 -6.9
49,266 - SGL_RS00225 0.80 -5.7

Or see this region's nucleotide sequence