Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00190 and SGL_RS00195 are separated by 94 nucleotides SGL_RS00195 and SGL_RS00200 are separated by 44 nucleotides SGL_RS00200 and SGL_RS00205 are separated by 181 nucleotides
SGL_RS00190: SGL_RS00190 - sulfotransferase, at 40,411 to 41,316
_RS00190
SGL_RS00195: SGL_RS00195 - glycosyltransferase family 2 protein, at 41,411 to 42,397
_RS00195
SGL_RS00200: SGL_RS00200 - glycosyltransferase family 25 protein, at 42,442 to 43,161
_RS00200
SGL_RS00205: SGL_RS00205 - sulfotransferase, at 43,343 to 44,293
_RS00205
Position (kb) 41
42
43 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 40.424 kb on + strand at 40.482 kb on + strand at 40.483 kb on - strand at 40.509 kb on - strand, within SGL_RS00190 at 40.516 kb on + strand, within SGL_RS00190 at 40.649 kb on - strand, within SGL_RS00190 at 40.779 kb on - strand, within SGL_RS00190 at 40.789 kb on - strand, within SGL_RS00190 at 40.832 kb on + strand, within SGL_RS00190 at 41.013 kb on + strand, within SGL_RS00190 at 41.042 kb on + strand, within SGL_RS00190 at 41.046 kb on + strand, within SGL_RS00190 at 41.083 kb on - strand, within SGL_RS00190 at 41.111 kb on - strand, within SGL_RS00190 at 41.392 kb on + strand at 41.533 kb on + strand, within SGL_RS00195 at 41.608 kb on + strand, within SGL_RS00195 at 41.608 kb on + strand, within SGL_RS00195 at 41.616 kb on - strand, within SGL_RS00195 at 41.616 kb on - strand, within SGL_RS00195 at 41.616 kb on - strand, within SGL_RS00195 at 41.627 kb on - strand, within SGL_RS00195 at 41.629 kb on + strand, within SGL_RS00195 at 41.637 kb on - strand, within SGL_RS00195 at 41.656 kb on - strand, within SGL_RS00195 at 41.698 kb on - strand, within SGL_RS00195 at 41.878 kb on - strand, within SGL_RS00195 at 42.008 kb on - strand, within SGL_RS00195 at 42.180 kb on - strand, within SGL_RS00195 at 42.534 kb on + strand, within SGL_RS00200 at 42.637 kb on - strand, within SGL_RS00200 at 42.651 kb on - strand, within SGL_RS00200 at 42.976 kb on + strand, within SGL_RS00200 at 43.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 40,424 + +0.0 40,482 + -1.4 40,483 - -3.7 40,509 - SGL_RS00190 0.11 -4.5 40,516 + SGL_RS00190 0.12 -2.6 40,649 - SGL_RS00190 0.26 -7.0 40,779 - SGL_RS00190 0.41 -6.6 40,789 - SGL_RS00190 0.42 -7.8 40,832 + SGL_RS00190 0.46 -5.2 41,013 + SGL_RS00190 0.66 -6.4 41,042 + SGL_RS00190 0.70 -6.8 41,046 + SGL_RS00190 0.70 -5.7 41,083 - SGL_RS00190 0.74 -7.0 41,111 - SGL_RS00190 0.77 -6.4 41,392 + +0.2 41,533 + SGL_RS00195 0.12 -7.3 41,608 + SGL_RS00195 0.20 -6.0 41,608 + SGL_RS00195 0.20 -4.4 41,616 - SGL_RS00195 0.21 -5.3 41,616 - SGL_RS00195 0.21 -5.8 41,616 - SGL_RS00195 0.21 -7.5 41,627 - SGL_RS00195 0.22 -5.8 41,629 + SGL_RS00195 0.22 -0.4 41,637 - SGL_RS00195 0.23 -7.2 41,656 - SGL_RS00195 0.25 -3.8 41,698 - SGL_RS00195 0.29 -2.9 41,878 - SGL_RS00195 0.47 -6.6 42,008 - SGL_RS00195 0.60 -6.5 42,180 - SGL_RS00195 0.78 -6.0 42,534 + SGL_RS00200 0.13 -1.6 42,637 - SGL_RS00200 0.27 +0.6 42,651 - SGL_RS00200 0.29 -0.1 42,976 + SGL_RS00200 0.74 -2.5 43,113 + +0.4
Or see this region's nucleotide sequence