Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18230

Experiment: L/D cycles short day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18220 and SGL_RS18225 are separated by 38 nucleotidesSGL_RS18225 and SGL_RS18230 are separated by 108 nucleotidesSGL_RS18230 and SGL_RS18235 are separated by 113 nucleotides SGL_RS18220: SGL_RS18220 - hypothetical protein, at 3,538,447 to 3,538,803 _RS18220 SGL_RS18225: SGL_RS18225 - cofactor assembly of complex C subunit B, at 3,538,842 to 3,539,387 _RS18225 SGL_RS18230: SGL_RS18230 - DUF2993 domain-containing protein, at 3,539,496 to 3,540,212 _RS18230 SGL_RS18235: SGL_RS18235 - NAD-dependent epimerase/dehydratase, at 3,540,326 to 3,541,258 _RS18235 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -2 -1 0 1at 3539.037 kb on - strand, within SGL_RS18225at 3539.070 kb on + strand, within SGL_RS18225at 3539.124 kb on - strand, within SGL_RS18225at 3539.139 kb on - strand, within SGL_RS18225at 3539.214 kb on + strand, within SGL_RS18225at 3539.247 kb on - strand, within SGL_RS18225at 3539.632 kb on + strand, within SGL_RS18230at 3539.647 kb on - strand, within SGL_RS18230at 3539.997 kb on + strand, within SGL_RS18230at 3540.041 kb on - strand, within SGL_RS18230at 3540.447 kb on + strand, within SGL_RS18235at 3540.752 kb on + strand, within SGL_RS18235

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Per-strain Table

Position Strand Gene LocusTag Fraction L/D cycles short day
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3,539,037 - SGL_RS18225 0.36 +0.0
3,539,070 + SGL_RS18225 0.42 +0.7
3,539,124 - SGL_RS18225 0.52 +0.8
3,539,139 - SGL_RS18225 0.54 -0.4
3,539,214 + SGL_RS18225 0.68 +0.1
3,539,247 - SGL_RS18225 0.74 +0.3
3,539,632 + SGL_RS18230 0.19 -1.6
3,539,647 - SGL_RS18230 0.21 -1.8
3,539,997 + SGL_RS18230 0.70 -2.2
3,540,041 - SGL_RS18230 0.76 -2.5
3,540,447 + SGL_RS18235 0.13 -2.4
3,540,752 + SGL_RS18235 0.46 -2.1

Or see this region's nucleotide sequence