Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18220 and SGL_RS18225 are separated by 38 nucleotides SGL_RS18225 and SGL_RS18230 are separated by 108 nucleotides SGL_RS18230 and SGL_RS18235 are separated by 113 nucleotides
SGL_RS18220: SGL_RS18220 - hypothetical protein, at 3,538,447 to 3,538,803
_RS18220
SGL_RS18225: SGL_RS18225 - cofactor assembly of complex C subunit B, at 3,538,842 to 3,539,387
_RS18225
SGL_RS18230: SGL_RS18230 - DUF2993 domain-containing protein, at 3,539,496 to 3,540,212
_RS18230
SGL_RS18235: SGL_RS18235 - NAD-dependent epimerase/dehydratase, at 3,540,326 to 3,541,258
_RS18235
Position (kb)
3539
3540
3541 Strain fitness (log2 ratio)
-2
-1
0
1 at 3539.037 kb on - strand, within SGL_RS18225 at 3539.070 kb on + strand, within SGL_RS18225 at 3539.124 kb on - strand, within SGL_RS18225 at 3539.139 kb on - strand, within SGL_RS18225 at 3539.214 kb on + strand, within SGL_RS18225 at 3539.247 kb on - strand, within SGL_RS18225 at 3539.632 kb on + strand, within SGL_RS18230 at 3539.647 kb on - strand, within SGL_RS18230 at 3539.997 kb on + strand, within SGL_RS18230 at 3540.041 kb on - strand, within SGL_RS18230 at 3540.447 kb on + strand, within SGL_RS18235 at 3540.752 kb on + strand, within SGL_RS18235
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 3,539,037 - SGL_RS18225 0.36 +0.0 3,539,070 + SGL_RS18225 0.42 +0.7 3,539,124 - SGL_RS18225 0.52 +0.8 3,539,139 - SGL_RS18225 0.54 -0.4 3,539,214 + SGL_RS18225 0.68 +0.1 3,539,247 - SGL_RS18225 0.74 +0.3 3,539,632 + SGL_RS18230 0.19 -1.6 3,539,647 - SGL_RS18230 0.21 -1.8 3,539,997 + SGL_RS18230 0.70 -2.2 3,540,041 - SGL_RS18230 0.76 -2.5 3,540,447 + SGL_RS18235 0.13 -2.4 3,540,752 + SGL_RS18235 0.46 -2.1
Or see this region's nucleotide sequence