Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14905

Experiment: L/D cycles short day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14895 and SGL_RS14900 overlap by 4 nucleotidesSGL_RS14900 and SGL_RS14905 are separated by 65 nucleotidesSGL_RS14905 and SGL_RS14910 are separated by 202 nucleotides SGL_RS14895: SGL_RS14895 - DUF2811 domain-containing protein, at 2,797,198 to 2,797,425 _RS14895 SGL_RS14900: SGL_RS14900 - aminoacyl-tRNA hydrolase, at 2,797,422 to 2,798,006 _RS14900 SGL_RS14905: SGL_RS14905 - 30S ribosomal protein PSRP-3, at 2,798,072 to 2,798,410 _RS14905 SGL_RS14910: SGL_RS14910 - Tic22 family chloroplast protein importer, at 2,798,613 to 2,799,473 _RS14910 Position (kb) 2798 2799Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2797.160 kb on + strandat 2797.281 kb on - strand, within SGL_RS14895at 2797.309 kb on + strand, within SGL_RS14895at 2797.323 kb on - strand, within SGL_RS14895at 2797.492 kb on - strand, within SGL_RS14900at 2797.550 kb on - strand, within SGL_RS14900at 2797.672 kb on - strand, within SGL_RS14900at 2797.967 kb on + strandat 2798.080 kb on + strandat 2798.133 kb on - strand, within SGL_RS14905at 2798.178 kb on + strand, within SGL_RS14905at 2798.280 kb on + strand, within SGL_RS14905at 2798.309 kb on + strand, within SGL_RS14905at 2798.583 kb on + strandat 2798.591 kb on - strandat 2799.139 kb on - strand, within SGL_RS14910at 2799.314 kb on - strand, within SGL_RS14910at 2799.320 kb on + strand, within SGL_RS14910

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Per-strain Table

Position Strand Gene LocusTag Fraction L/D cycles short day
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2,797,160 + -0.3
2,797,281 - SGL_RS14895 0.36 -0.4
2,797,309 + SGL_RS14895 0.49 +0.0
2,797,323 - SGL_RS14895 0.55 +0.0
2,797,492 - SGL_RS14900 0.12 -1.5
2,797,550 - SGL_RS14900 0.22 -2.4
2,797,672 - SGL_RS14900 0.43 -1.9
2,797,967 + +0.1
2,798,080 + -1.3
2,798,133 - SGL_RS14905 0.18 -2.0
2,798,178 + SGL_RS14905 0.31 -1.3
2,798,280 + SGL_RS14905 0.61 -1.0
2,798,309 + SGL_RS14905 0.70 -0.3
2,798,583 + -1.3
2,798,591 - -3.4
2,799,139 - SGL_RS14910 0.61 -4.2
2,799,314 - SGL_RS14910 0.81 -3.1
2,799,320 + SGL_RS14910 0.82 -3.6

Or see this region's nucleotide sequence