Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11545 and SGL_RS11550 are separated by 596 nucleotides SGL_RS11550 and SGL_RS11555 are separated by 159 nucleotides SGL_RS11555 and SGL_RS11560 are separated by 13 nucleotides
SGL_RS11545: SGL_RS11545 - type IV pilus twitching motility protein PilT, at 2,045,078 to 2,046,364
_RS11545
SGL_RS11550: SGL_RS11550 - hypothetical protein, at 2,046,961 to 2,047,335
_RS11550
SGL_RS11555: SGL_RS11555 - hypothetical protein, at 2,047,495 to 2,048,130
_RS11555
SGL_RS11560: SGL_RS11560 - DNA-directed RNA polymerase subunit omega, at 2,048,144 to 2,048,374
_RS11560
Position (kb) 2046
2047
2048 Strain fitness (log2 ratio) -1
0
1 at 2046.929 kb on - strand at 2047.052 kb on + strand, within SGL_RS11550 at 2047.437 kb on - strand at 2047.447 kb on - strand at 2047.541 kb on - strand at 2047.633 kb on - strand, within SGL_RS11555 at 2047.875 kb on - strand, within SGL_RS11555 at 2047.930 kb on - strand, within SGL_RS11555 at 2047.988 kb on + strand, within SGL_RS11555 at 2048.128 kb on - strand at 2048.313 kb on + strand, within SGL_RS11560
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 2,046,929 - -0.6 2,047,052 + SGL_RS11550 0.24 -1.1 2,047,437 - -0.0 2,047,447 - +0.6 2,047,541 - +0.3 2,047,633 - SGL_RS11555 0.22 +0.4 2,047,875 - SGL_RS11555 0.60 +0.0 2,047,930 - SGL_RS11555 0.68 -0.1 2,047,988 + SGL_RS11555 0.78 +1.3 2,048,128 - +0.2 2,048,313 + SGL_RS11560 0.73 -0.4
Or see this region's nucleotide sequence