Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09395

Experiment: L/D cycles short day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09385 and SGL_RS09390 are separated by 25 nucleotidesSGL_RS09390 and SGL_RS09395 are separated by 109 nucleotidesSGL_RS09395 and SGL_RS09400 are separated by 167 nucleotides SGL_RS09385: SGL_RS09385 - 2-carboxy-1,4-naphthoquinone phytyltransferase, at 1,609,826 to 1,610,749 _RS09385 SGL_RS09390: SGL_RS09390 - pentapeptide repeat-containing protein, at 1,610,775 to 1,611,464 _RS09390 SGL_RS09395: SGL_RS09395 - aldo/keto reductase, at 1,611,574 to 1,612,629 _RS09395 SGL_RS09400: SGL_RS09400 - GTPase HflX, at 1,612,797 to 1,614,401 _RS09400 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1610.602 kb on + strand, within SGL_RS09385at 1610.610 kb on - strand, within SGL_RS09385at 1610.738 kb on + strandat 1610.804 kb on - strandat 1610.881 kb on + strand, within SGL_RS09390at 1610.889 kb on - strand, within SGL_RS09390at 1610.889 kb on - strand, within SGL_RS09390at 1610.916 kb on + strand, within SGL_RS09390at 1610.918 kb on - strand, within SGL_RS09390at 1610.919 kb on - strand, within SGL_RS09390at 1611.029 kb on - strand, within SGL_RS09390at 1611.046 kb on + strand, within SGL_RS09390at 1611.075 kb on - strand, within SGL_RS09390at 1611.174 kb on - strand, within SGL_RS09390at 1611.182 kb on + strand, within SGL_RS09390at 1611.189 kb on - strand, within SGL_RS09390at 1611.198 kb on + strand, within SGL_RS09390at 1611.203 kb on + strand, within SGL_RS09390at 1611.224 kb on - strand, within SGL_RS09390at 1611.321 kb on + strand, within SGL_RS09390at 1611.421 kb on + strandat 1611.748 kb on + strand, within SGL_RS09395at 1612.045 kb on + strand, within SGL_RS09395at 1612.099 kb on + strand, within SGL_RS09395at 1612.163 kb on - strand, within SGL_RS09395at 1612.191 kb on + strand, within SGL_RS09395at 1612.191 kb on + strand, within SGL_RS09395at 1612.199 kb on - strand, within SGL_RS09395at 1612.248 kb on - strand, within SGL_RS09395at 1612.248 kb on - strand, within SGL_RS09395at 1612.544 kb on + strandat 1612.637 kb on + strandat 1612.724 kb on + strandat 1612.732 kb on - strandat 1612.819 kb on - strandat 1612.891 kb on + strandat 1612.899 kb on - strandat 1612.904 kb on - strandat 1613.037 kb on + strand, within SGL_RS09400at 1613.047 kb on + strand, within SGL_RS09400at 1613.173 kb on - strand, within SGL_RS09400at 1613.176 kb on + strand, within SGL_RS09400at 1613.346 kb on + strand, within SGL_RS09400at 1613.518 kb on - strand, within SGL_RS09400at 1613.523 kb on - strand, within SGL_RS09400at 1613.543 kb on - strand, within SGL_RS09400at 1613.568 kb on - strand, within SGL_RS09400at 1613.585 kb on + strand, within SGL_RS09400at 1613.625 kb on + strand, within SGL_RS09400

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Per-strain Table

Position Strand Gene LocusTag Fraction L/D cycles short day
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1,610,602 + SGL_RS09385 0.84 -1.1
1,610,610 - SGL_RS09385 0.85 -3.1
1,610,738 + -1.7
1,610,804 - -0.1
1,610,881 + SGL_RS09390 0.15 -0.4
1,610,889 - SGL_RS09390 0.17 -0.2
1,610,889 - SGL_RS09390 0.17 -0.1
1,610,916 + SGL_RS09390 0.20 -1.7
1,610,918 - SGL_RS09390 0.21 +0.5
1,610,919 - SGL_RS09390 0.21 +0.2
1,611,029 - SGL_RS09390 0.37 +0.4
1,611,046 + SGL_RS09390 0.39 -0.2
1,611,075 - SGL_RS09390 0.43 -0.2
1,611,174 - SGL_RS09390 0.58 -0.2
1,611,182 + SGL_RS09390 0.59 -0.4
1,611,189 - SGL_RS09390 0.60 -0.1
1,611,198 + SGL_RS09390 0.61 +0.0
1,611,203 + SGL_RS09390 0.62 -0.4
1,611,224 - SGL_RS09390 0.65 +0.2
1,611,321 + SGL_RS09390 0.79 -0.4
1,611,421 + +0.4
1,611,748 + SGL_RS09395 0.16 -2.8
1,612,045 + SGL_RS09395 0.45 -2.7
1,612,099 + SGL_RS09395 0.50 -4.0
1,612,163 - SGL_RS09395 0.56 -2.4
1,612,191 + SGL_RS09395 0.58 -1.7
1,612,191 + SGL_RS09395 0.58 -2.9
1,612,199 - SGL_RS09395 0.59 -2.9
1,612,248 - SGL_RS09395 0.64 -4.6
1,612,248 - SGL_RS09395 0.64 -3.3
1,612,544 + -2.3
1,612,637 + -0.2
1,612,724 + +0.6
1,612,732 - +0.4
1,612,819 - -0.8
1,612,891 + +0.4
1,612,899 - -0.6
1,612,904 - -0.1
1,613,037 + SGL_RS09400 0.15 -0.4
1,613,047 + SGL_RS09400 0.16 -0.0
1,613,173 - SGL_RS09400 0.23 +0.1
1,613,176 + SGL_RS09400 0.24 -0.9
1,613,346 + SGL_RS09400 0.34 -0.3
1,613,518 - SGL_RS09400 0.45 +0.4
1,613,523 - SGL_RS09400 0.45 -0.1
1,613,543 - SGL_RS09400 0.46 -0.2
1,613,568 - SGL_RS09400 0.48 +0.5
1,613,585 + SGL_RS09400 0.49 +0.3
1,613,625 + SGL_RS09400 0.52 -0.1

Or see this region's nucleotide sequence