Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06675

Experiment: L/D cycles short day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06670 and SGL_RS06675 are separated by 68 nucleotidesSGL_RS06675 and SGL_RS06680 are separated by 106 nucleotides SGL_RS06670: SGL_RS06670 - TIGR01777 family oxidoreductase, at 1,025,519 to 1,026,442 _RS06670 SGL_RS06675: SGL_RS06675 - ABC transporter ATP-binding protein, at 1,026,511 to 1,027,737 _RS06675 SGL_RS06680: SGL_RS06680 - serine/threonine-protein kinase, at 1,027,844 to 1,029,331 _RS06680 Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1025.590 kb on - strandat 1025.616 kb on + strand, within SGL_RS06670at 1025.628 kb on - strand, within SGL_RS06670at 1025.703 kb on + strand, within SGL_RS06670at 1025.974 kb on + strand, within SGL_RS06670at 1026.038 kb on + strand, within SGL_RS06670at 1026.082 kb on + strand, within SGL_RS06670at 1026.114 kb on + strand, within SGL_RS06670at 1026.225 kb on - strand, within SGL_RS06670at 1026.263 kb on + strand, within SGL_RS06670at 1026.456 kb on - strandat 1026.597 kb on + strandat 1026.811 kb on - strand, within SGL_RS06675at 1026.817 kb on + strand, within SGL_RS06675at 1026.896 kb on + strand, within SGL_RS06675at 1027.087 kb on - strand, within SGL_RS06675at 1027.239 kb on + strand, within SGL_RS06675at 1027.304 kb on - strand, within SGL_RS06675at 1027.349 kb on + strand, within SGL_RS06675at 1027.511 kb on + strand, within SGL_RS06675at 1027.906 kb on + strandat 1027.923 kb on + strandat 1027.925 kb on + strandat 1027.994 kb on + strand, within SGL_RS06680at 1028.021 kb on + strand, within SGL_RS06680at 1028.220 kb on - strand, within SGL_RS06680at 1028.489 kb on + strand, within SGL_RS06680at 1028.574 kb on - strand, within SGL_RS06680at 1028.590 kb on - strand, within SGL_RS06680at 1028.730 kb on - strand, within SGL_RS06680

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Per-strain Table

Position Strand Gene LocusTag Fraction L/D cycles short day
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1,025,590 - -0.2
1,025,616 + SGL_RS06670 0.10 +0.2
1,025,628 - SGL_RS06670 0.12 -0.8
1,025,703 + SGL_RS06670 0.20 +0.7
1,025,974 + SGL_RS06670 0.49 -1.8
1,026,038 + SGL_RS06670 0.56 -0.1
1,026,082 + SGL_RS06670 0.61 -0.1
1,026,114 + SGL_RS06670 0.64 -0.3
1,026,225 - SGL_RS06670 0.76 -0.5
1,026,263 + SGL_RS06670 0.81 -1.4
1,026,456 - +0.3
1,026,597 + -3.1
1,026,811 - SGL_RS06675 0.24 -5.0
1,026,817 + SGL_RS06675 0.25 -3.3
1,026,896 + SGL_RS06675 0.31 -2.1
1,027,087 - SGL_RS06675 0.47 -4.5
1,027,239 + SGL_RS06675 0.59 -3.0
1,027,304 - SGL_RS06675 0.65 -4.6
1,027,349 + SGL_RS06675 0.68 -3.1
1,027,511 + SGL_RS06675 0.81 -4.1
1,027,906 + -0.4
1,027,923 + -0.2
1,027,925 + -0.1
1,027,994 + SGL_RS06680 0.10 +0.3
1,028,021 + SGL_RS06680 0.12 -0.2
1,028,220 - SGL_RS06680 0.25 +0.3
1,028,489 + SGL_RS06680 0.43 +0.1
1,028,574 - SGL_RS06680 0.49 -0.0
1,028,590 - SGL_RS06680 0.50 -0.2
1,028,730 - SGL_RS06680 0.60 +0.4

Or see this region's nucleotide sequence