Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05550 and SGL_RS05555 are separated by 151 nucleotides SGL_RS05555 and SGL_RS05560 are separated by 72 nucleotides SGL_RS05560 and SGL_RS05565 are separated by 31 nucleotides SGL_RS05565 and SGL_RS05570 are separated by 56 nucleotides
SGL_RS05550: SGL_RS05550 - cytochrome c oxidase subunit CtaE, at 793,509 to 794,210
_RS05550
SGL_RS05555: SGL_RS05555 - thioredoxin family protein, at 794,362 to 794,691
_RS05555
SGL_RS05560: SGL_RS05560 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 794,764 to 795,900
_RS05560
SGL_RS05565: SGL_RS05565 - ABC transporter ATP-binding protein, at 795,932 to 796,732
_RS05565
SGL_RS05570: SGL_RS05570 - ABC transporter permease, at 796,789 to 797,631
_RS05570
Position (kb) 794
795
796 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 793.782 kb on + strand, within SGL_RS05550 at 793.849 kb on + strand, within SGL_RS05550 at 793.961 kb on - strand, within SGL_RS05550 at 794.064 kb on + strand, within SGL_RS05550 at 794.072 kb on - strand, within SGL_RS05550 at 794.260 kb on - strand at 794.286 kb on + strand at 794.299 kb on - strand at 794.320 kb on + strand at 794.328 kb on - strand at 794.499 kb on + strand, within SGL_RS05555 at 794.560 kb on + strand, within SGL_RS05555 at 794.572 kb on + strand, within SGL_RS05555 at 794.835 kb on - strand at 794.881 kb on - strand, within SGL_RS05560 at 795.076 kb on - strand, within SGL_RS05560 at 795.235 kb on - strand, within SGL_RS05560 at 795.250 kb on + strand, within SGL_RS05560 at 795.256 kb on + strand, within SGL_RS05560 at 795.276 kb on + strand, within SGL_RS05560 at 795.358 kb on - strand, within SGL_RS05560 at 795.373 kb on - strand, within SGL_RS05560 at 795.402 kb on - strand, within SGL_RS05560 at 795.734 kb on - strand, within SGL_RS05560 at 795.773 kb on - strand, within SGL_RS05560 at 795.826 kb on + strand at 795.961 kb on - strand at 796.147 kb on + strand, within SGL_RS05565 at 796.287 kb on + strand, within SGL_RS05565 at 796.295 kb on - strand, within SGL_RS05565 at 796.429 kb on - strand, within SGL_RS05565 at 796.494 kb on + strand, within SGL_RS05565 at 796.525 kb on + strand, within SGL_RS05565
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 793,782 + SGL_RS05550 0.39 +0.4 793,849 + SGL_RS05550 0.48 +0.0 793,961 - SGL_RS05550 0.64 -0.1 794,064 + SGL_RS05550 0.79 +0.2 794,072 - SGL_RS05550 0.80 +0.1 794,260 - +0.3 794,286 + -0.3 794,299 - -1.1 794,320 + -0.3 794,328 - -2.7 794,499 + SGL_RS05555 0.42 -1.6 794,560 + SGL_RS05555 0.60 -1.7 794,572 + SGL_RS05555 0.64 -2.6 794,835 - -4.0 794,881 - SGL_RS05560 0.10 -0.8 795,076 - SGL_RS05560 0.27 -1.4 795,235 - SGL_RS05560 0.41 -3.7 795,250 + SGL_RS05560 0.43 -3.0 795,256 + SGL_RS05560 0.43 -4.1 795,276 + SGL_RS05560 0.45 -3.8 795,358 - SGL_RS05560 0.52 -4.7 795,373 - SGL_RS05560 0.54 -2.9 795,402 - SGL_RS05560 0.56 -4.3 795,734 - SGL_RS05560 0.85 -3.5 795,773 - SGL_RS05560 0.89 -3.3 795,826 + -2.1 795,961 - -0.2 796,147 + SGL_RS05565 0.27 -0.3 796,287 + SGL_RS05565 0.44 -0.1 796,295 - SGL_RS05565 0.45 +0.2 796,429 - SGL_RS05565 0.62 -0.0 796,494 + SGL_RS05565 0.70 -0.1 796,525 + SGL_RS05565 0.74 -0.6
Or see this region's nucleotide sequence