Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05460 and SGL_RS05465 are separated by 39 nucleotides SGL_RS05465 and SGL_RS05470 are separated by 169 nucleotides SGL_RS05470 and SGL_RS05475 overlap by 4 nucleotides
SGL_RS05460: SGL_RS05460 - nicotinate-nucleotide adenylyltransferase, at 770,288 to 770,890
_RS05460
SGL_RS05465: SGL_RS05465 - hypothetical protein, at 770,930 to 771,481
_RS05465
SGL_RS05470: SGL_RS05470 - dihydropteroate synthase, at 771,651 to 772,520
_RS05470
SGL_RS05475: SGL_RS05475 - glycosyltransferase family 39 protein, at 772,517 to 773,905
_RS05475
Position (kb) 771
772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 771.248 kb on - strand, within SGL_RS05465 at 771.265 kb on - strand, within SGL_RS05465 at 771.332 kb on - strand, within SGL_RS05465 at 771.351 kb on + strand, within SGL_RS05465 at 771.351 kb on + strand, within SGL_RS05465 at 771.426 kb on - strand at 771.547 kb on - strand at 771.566 kb on + strand at 771.574 kb on - strand at 771.597 kb on + strand at 771.648 kb on + strand at 771.663 kb on + strand at 771.710 kb on - strand at 771.769 kb on + strand, within SGL_RS05470 at 771.769 kb on + strand, within SGL_RS05470 at 771.831 kb on + strand, within SGL_RS05470 at 772.008 kb on + strand, within SGL_RS05470 at 772.085 kb on + strand, within SGL_RS05470 at 772.202 kb on - strand, within SGL_RS05470 at 772.290 kb on + strand, within SGL_RS05470 at 772.300 kb on + strand, within SGL_RS05470 at 772.399 kb on + strand, within SGL_RS05470 at 772.482 kb on + strand at 772.490 kb on - strand at 772.495 kb on - strand at 772.580 kb on - strand at 772.633 kb on - strand at 772.658 kb on - strand, within SGL_RS05475 at 772.852 kb on + strand, within SGL_RS05475 at 772.934 kb on + strand, within SGL_RS05475 at 772.934 kb on - strand, within SGL_RS05475 at 772.971 kb on + strand, within SGL_RS05475 at 773.206 kb on - strand, within SGL_RS05475 at 773.315 kb on + strand, within SGL_RS05475 at 773.368 kb on - strand, within SGL_RS05475 at 773.416 kb on + strand, within SGL_RS05475 at 773.429 kb on + strand, within SGL_RS05475 at 773.429 kb on + strand, within SGL_RS05475 at 773.439 kb on + strand, within SGL_RS05475 at 773.439 kb on - strand, within SGL_RS05475 at 773.471 kb on - strand, within SGL_RS05475 at 773.498 kb on + strand, within SGL_RS05475
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 771,248 - SGL_RS05465 0.58 -2.5 771,265 - SGL_RS05465 0.61 -0.8 771,332 - SGL_RS05465 0.73 -0.2 771,351 + SGL_RS05465 0.76 -1.1 771,351 + SGL_RS05465 0.76 -0.2 771,426 - +0.1 771,547 - -0.3 771,566 + -1.0 771,574 - -0.0 771,597 + -1.1 771,648 + +0.2 771,663 + +0.2 771,710 - -3.3 771,769 + SGL_RS05470 0.14 -0.8 771,769 + SGL_RS05470 0.14 -2.7 771,831 + SGL_RS05470 0.21 -2.7 772,008 + SGL_RS05470 0.41 -2.1 772,085 + SGL_RS05470 0.50 -0.5 772,202 - SGL_RS05470 0.63 -1.9 772,290 + SGL_RS05470 0.73 +0.2 772,300 + SGL_RS05470 0.75 -2.8 772,399 + SGL_RS05470 0.86 -4.3 772,482 + -1.1 772,490 - -1.1 772,495 - -3.1 772,580 - -0.0 772,633 - +0.5 772,658 - SGL_RS05475 0.10 +0.2 772,852 + SGL_RS05475 0.24 -0.1 772,934 + SGL_RS05475 0.30 -0.1 772,934 - SGL_RS05475 0.30 +0.2 772,971 + SGL_RS05475 0.33 +0.2 773,206 - SGL_RS05475 0.50 +0.0 773,315 + SGL_RS05475 0.57 -0.4 773,368 - SGL_RS05475 0.61 -0.1 773,416 + SGL_RS05475 0.65 +0.2 773,429 + SGL_RS05475 0.66 +0.0 773,429 + SGL_RS05475 0.66 -0.3 773,439 + SGL_RS05475 0.66 +0.0 773,439 - SGL_RS05475 0.66 -0.1 773,471 - SGL_RS05475 0.69 -0.4 773,498 + SGL_RS05475 0.71 +0.2
Or see this region's nucleotide sequence