Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05430 and SGL_RS05435 are separated by 228 nucleotides SGL_RS05435 and SGL_RS05440 are separated by 188 nucleotides
SGL_RS05430: SGL_RS05430 - hypothetical protein, at 763,317 to 764,072
_RS05430
SGL_RS05435: SGL_RS05435 - heavy metal translocating P-type ATPase, at 764,301 to 766,538
_RS05435
SGL_RS05440: SGL_RS05440 - ACP S-malonyltransferase, at 766,727 to 767,608
_RS05440
Position (kb) 764
765
766
767 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 763.301 kb on + strand at 763.305 kb on + strand at 763.309 kb on - strand at 763.352 kb on - strand at 763.516 kb on + strand, within SGL_RS05430 at 763.524 kb on - strand, within SGL_RS05430 at 763.563 kb on + strand, within SGL_RS05430 at 763.563 kb on + strand, within SGL_RS05430 at 763.571 kb on - strand, within SGL_RS05430 at 763.744 kb on + strand, within SGL_RS05430 at 763.744 kb on + strand, within SGL_RS05430 at 763.844 kb on + strand, within SGL_RS05430 at 763.846 kb on + strand, within SGL_RS05430 at 763.931 kb on - strand, within SGL_RS05430 at 763.940 kb on - strand, within SGL_RS05430 at 763.967 kb on - strand, within SGL_RS05430 at 763.980 kb on + strand, within SGL_RS05430 at 764.056 kb on - strand at 764.593 kb on + strand, within SGL_RS05435 at 764.601 kb on - strand, within SGL_RS05435 at 764.787 kb on - strand, within SGL_RS05435 at 765.020 kb on - strand, within SGL_RS05435 at 765.143 kb on + strand, within SGL_RS05435 at 765.178 kb on - strand, within SGL_RS05435 at 765.211 kb on - strand, within SGL_RS05435 at 765.258 kb on - strand, within SGL_RS05435 at 765.312 kb on - strand, within SGL_RS05435 at 765.490 kb on - strand, within SGL_RS05435 at 765.718 kb on + strand, within SGL_RS05435 at 766.018 kb on - strand, within SGL_RS05435 at 766.364 kb on - strand at 766.490 kb on + strand at 766.538 kb on + strand at 766.558 kb on + strand at 766.889 kb on - strand, within SGL_RS05440 at 767.218 kb on - strand, within SGL_RS05440 at 767.220 kb on - strand, within SGL_RS05440 at 767.223 kb on - strand, within SGL_RS05440 at 767.242 kb on + strand, within SGL_RS05440 at 767.320 kb on - strand, within SGL_RS05440
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 763,301 + -0.0 763,305 + -0.0 763,309 - +0.4 763,352 - +0.1 763,516 + SGL_RS05430 0.26 +0.0 763,524 - SGL_RS05430 0.27 +0.2 763,563 + SGL_RS05430 0.33 +0.2 763,563 + SGL_RS05430 0.33 +0.6 763,571 - SGL_RS05430 0.34 +0.3 763,744 + SGL_RS05430 0.56 -0.5 763,744 + SGL_RS05430 0.56 -0.4 763,844 + SGL_RS05430 0.70 +0.3 763,846 + SGL_RS05430 0.70 +0.3 763,931 - SGL_RS05430 0.81 +0.0 763,940 - SGL_RS05430 0.82 -0.3 763,967 - SGL_RS05430 0.86 -0.1 763,980 + SGL_RS05430 0.88 +0.4 764,056 - +0.6 764,593 + SGL_RS05435 0.13 -0.1 764,601 - SGL_RS05435 0.13 -3.7 764,787 - SGL_RS05435 0.22 -3.9 765,020 - SGL_RS05435 0.32 -2.1 765,143 + SGL_RS05435 0.38 -1.1 765,178 - SGL_RS05435 0.39 -1.1 765,211 - SGL_RS05435 0.41 -2.1 765,258 - SGL_RS05435 0.43 -3.1 765,312 - SGL_RS05435 0.45 -3.3 765,490 - SGL_RS05435 0.53 -1.1 765,718 + SGL_RS05435 0.63 -0.1 766,018 - SGL_RS05435 0.77 -4.1 766,364 - -1.7 766,490 + -3.3 766,538 + -0.1 766,558 + -1.4 766,889 - SGL_RS05440 0.18 -0.7 767,218 - SGL_RS05440 0.56 -1.8 767,220 - SGL_RS05440 0.56 -2.7 767,223 - SGL_RS05440 0.56 -3.1 767,242 + SGL_RS05440 0.58 -2.1 767,320 - SGL_RS05440 0.67 -3.9
Or see this region's nucleotide sequence