Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05235 and SGL_RS05240 are separated by 45 nucleotides SGL_RS05240 and SGL_RS05245 are separated by 114 nucleotides SGL_RS05245 and SGL_RS05250 are separated by 110 nucleotides
SGL_RS05235: SGL_RS05235 - phycobilisome linker polypeptide, at 724,492 to 725,367
_RS05235
SGL_RS05240: SGL_RS05240 - phycobilisome linker polypeptide, at 725,413 to 726,234
_RS05240
SGL_RS05245: SGL_RS05245 - phycocyanin subunit alpha, at 726,349 to 726,837
_RS05245
SGL_RS05250: SGL_RS05250 - phycocyanin subunit beta, at 726,948 to 727,466
_RS05250
Position (kb) 725
726
727 Strain fitness (log2 ratio) -2
-1
0
1 at 724.531 kb on - strand at 724.563 kb on - strand at 724.713 kb on - strand, within SGL_RS05235 at 724.799 kb on + strand, within SGL_RS05235 at 724.950 kb on - strand, within SGL_RS05235 at 725.233 kb on + strand, within SGL_RS05235 at 725.554 kb on - strand, within SGL_RS05240 at 726.100 kb on + strand, within SGL_RS05240 at 726.190 kb on - strand at 726.200 kb on - strand at 726.321 kb on + strand at 726.399 kb on + strand, within SGL_RS05245 at 726.916 kb on - strand at 727.104 kb on + strand, within SGL_RS05250
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 724,531 - -0.1 724,563 - -1.5 724,713 - SGL_RS05235 0.25 -0.8 724,799 + SGL_RS05235 0.35 -1.4 724,950 - SGL_RS05235 0.52 -1.1 725,233 + SGL_RS05235 0.85 -2.4 725,554 - SGL_RS05240 0.17 -1.3 726,100 + SGL_RS05240 0.84 -2.5 726,190 - +0.7 726,200 - -1.5 726,321 + -1.1 726,399 + SGL_RS05245 0.10 -1.4 726,916 - -0.3 727,104 + SGL_RS05250 0.30 -2.7
Or see this region's nucleotide sequence