Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05205 and SGL_RS05210 are separated by 67 nucleotides SGL_RS05210 and SGL_RS05215 are separated by 190 nucleotides SGL_RS05215 and SGL_RS05220 are separated by 31 nucleotides
SGL_RS05205: SGL_RS05205 - DEAD/DEAH box helicase, at 716,309 to 719,665
_RS05205
SGL_RS05210: SGL_RS05210 - SLBB domain-containing protein, at 719,733 to 721,238
_RS05210
SGL_RS05215: SGL_RS05215 - TIGR02450 family Trp-rich protein, at 721,429 to 721,692
_RS05215
SGL_RS05220: SGL_RS05220 - DUF1995 family protein, at 721,724 to 722,479
_RS05220
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 719.213 kb on - strand, within SGL_RS05205 at 719.767 kb on + strand at 719.769 kb on + strand at 719.975 kb on - strand, within SGL_RS05210 at 720.057 kb on - strand, within SGL_RS05210 at 720.303 kb on + strand, within SGL_RS05210 at 720.305 kb on + strand, within SGL_RS05210 at 720.411 kb on + strand, within SGL_RS05210 at 720.555 kb on - strand, within SGL_RS05210 at 720.832 kb on - strand, within SGL_RS05210 at 721.017 kb on - strand, within SGL_RS05210 at 721.037 kb on + strand, within SGL_RS05210 at 721.056 kb on - strand, within SGL_RS05210 at 721.112 kb on - strand at 721.166 kb on + strand at 721.166 kb on + strand at 721.201 kb on - strand at 721.329 kb on - strand at 721.471 kb on - strand, within SGL_RS05215 at 721.652 kb on - strand, within SGL_RS05215 at 721.722 kb on - strand at 721.751 kb on + strand at 721.945 kb on + strand, within SGL_RS05220
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 719,213 - SGL_RS05205 0.87 +0.3 719,767 + -1.1 719,769 + -2.6 719,975 - SGL_RS05210 0.16 -1.7 720,057 - SGL_RS05210 0.22 -4.1 720,303 + SGL_RS05210 0.38 -1.1 720,305 + SGL_RS05210 0.38 -1.0 720,411 + SGL_RS05210 0.45 -2.0 720,555 - SGL_RS05210 0.55 -1.5 720,832 - SGL_RS05210 0.73 -1.5 721,017 - SGL_RS05210 0.85 -2.7 721,037 + SGL_RS05210 0.87 -1.5 721,056 - SGL_RS05210 0.88 -1.5 721,112 - -1.3 721,166 + -2.2 721,166 + -0.8 721,201 - -1.5 721,329 - +0.5 721,471 - SGL_RS05215 0.16 -0.5 721,652 - SGL_RS05215 0.84 -0.4 721,722 - +0.4 721,751 + +0.1 721,945 + SGL_RS05220 0.29 -0.5
Or see this region's nucleotide sequence