Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04730 and SGL_RS04735 are separated by 23 nucleotides SGL_RS04735 and SGL_RS04740 overlap by 4 nucleotides SGL_RS04740 and SGL_RS04745 are separated by 264 nucleotides
SGL_RS04730: SGL_RS04730 - N-acetylmuramoyl-L-alanine amidase, at 613,801 to 614,817
_RS04730
SGL_RS04735: SGL_RS04735 - hypothetical protein, at 614,841 to 615,269
_RS04735
SGL_RS04740: SGL_RS04740 - DUF1036 domain-containing protein, at 615,266 to 615,703
_RS04740
SGL_RS04745: SGL_RS04745 - STAS domain-containing protein, at 615,968 to 616,324
_RS04745
Position (kb) 614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2 at 613.878 kb on - strand at 613.883 kb on - strand at 613.884 kb on + strand at 613.884 kb on + strand at 613.959 kb on + strand, within SGL_RS04730 at 613.970 kb on + strand, within SGL_RS04730 at 614.073 kb on + strand, within SGL_RS04730 at 614.113 kb on + strand, within SGL_RS04730 at 614.145 kb on + strand, within SGL_RS04730 at 614.153 kb on - strand, within SGL_RS04730 at 614.176 kb on - strand, within SGL_RS04730 at 614.216 kb on - strand, within SGL_RS04730 at 614.296 kb on - strand, within SGL_RS04730 at 614.364 kb on + strand, within SGL_RS04730 at 614.377 kb on + strand, within SGL_RS04730 at 614.551 kb on - strand, within SGL_RS04730 at 614.604 kb on - strand, within SGL_RS04730 at 614.623 kb on - strand, within SGL_RS04730 at 614.627 kb on + strand, within SGL_RS04730 at 614.706 kb on + strand, within SGL_RS04730 at 614.890 kb on - strand, within SGL_RS04735 at 614.945 kb on - strand, within SGL_RS04735 at 614.989 kb on - strand, within SGL_RS04735 at 615.030 kb on - strand, within SGL_RS04735 at 615.108 kb on - strand, within SGL_RS04735 at 615.210 kb on - strand, within SGL_RS04735 at 615.337 kb on - strand, within SGL_RS04740 at 615.484 kb on - strand, within SGL_RS04740 at 615.484 kb on - strand, within SGL_RS04740 at 615.497 kb on + strand, within SGL_RS04740 at 615.504 kb on - strand, within SGL_RS04740 at 615.506 kb on - strand, within SGL_RS04740 at 615.506 kb on - strand, within SGL_RS04740 at 615.508 kb on + strand, within SGL_RS04740 at 615.566 kb on + strand, within SGL_RS04740 at 615.574 kb on - strand, within SGL_RS04740 at 615.711 kb on + strand at 615.748 kb on + strand at 615.748 kb on + strand at 615.781 kb on + strand at 615.789 kb on - strand at 615.789 kb on - strand at 616.013 kb on + strand, within SGL_RS04745 at 616.183 kb on + strand, within SGL_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 613,878 - +0.1 613,883 - +0.3 613,884 + +0.3 613,884 + +0.1 613,959 + SGL_RS04730 0.16 +0.4 613,970 + SGL_RS04730 0.17 +0.1 614,073 + SGL_RS04730 0.27 +0.3 614,113 + SGL_RS04730 0.31 +0.2 614,145 + SGL_RS04730 0.34 -0.5 614,153 - SGL_RS04730 0.35 +0.0 614,176 - SGL_RS04730 0.37 +0.1 614,216 - SGL_RS04730 0.41 +0.4 614,296 - SGL_RS04730 0.49 +0.2 614,364 + SGL_RS04730 0.55 +0.1 614,377 + SGL_RS04730 0.57 +0.7 614,551 - SGL_RS04730 0.74 -0.3 614,604 - SGL_RS04730 0.79 +1.8 614,623 - SGL_RS04730 0.81 -0.7 614,627 + SGL_RS04730 0.81 +0.6 614,706 + SGL_RS04730 0.89 -0.3 614,890 - SGL_RS04735 0.11 -2.4 614,945 - SGL_RS04735 0.24 -1.9 614,989 - SGL_RS04735 0.34 -2.3 615,030 - SGL_RS04735 0.44 -0.6 615,108 - SGL_RS04735 0.62 -1.5 615,210 - SGL_RS04735 0.86 -0.9 615,337 - SGL_RS04740 0.16 +0.1 615,484 - SGL_RS04740 0.50 -0.0 615,484 - SGL_RS04740 0.50 -0.0 615,497 + SGL_RS04740 0.53 +0.5 615,504 - SGL_RS04740 0.54 +0.4 615,506 - SGL_RS04740 0.55 -0.1 615,506 - SGL_RS04740 0.55 -0.1 615,508 + SGL_RS04740 0.55 -0.2 615,566 + SGL_RS04740 0.68 +0.0 615,574 - SGL_RS04740 0.70 -0.2 615,711 + -0.2 615,748 + -0.3 615,748 + +0.3 615,781 + +0.1 615,789 - +0.2 615,789 - -0.9 616,013 + SGL_RS04745 0.13 +0.7 616,183 + SGL_RS04745 0.60 -0.6
Or see this region's nucleotide sequence