Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04505 and SGL_RS04510 are separated by 133 nucleotides SGL_RS04510 and SGL_RS04515 are separated by 177 nucleotides
SGL_RS04505: SGL_RS04505 - phospholipid carrier-dependent glycosyltransferase, at 563,448 to 565,925
_RS04505
SGL_RS04510: SGL_RS04510 - DUF561 domain-containing protein, at 566,059 to 566,805
_RS04510
SGL_RS04515: SGL_RS04515 - 1-deoxy-D-xylulose-5-phosphate synthase, at 566,983 to 568,905
_RS04515
Position (kb) 566
567 Strain fitness (log2 ratio) -2
-1
0
1 at 565.066 kb on - strand, within SGL_RS04505 at 565.066 kb on - strand, within SGL_RS04505 at 565.066 kb on - strand, within SGL_RS04505 at 565.077 kb on - strand, within SGL_RS04505 at 565.180 kb on + strand, within SGL_RS04505 at 565.368 kb on - strand, within SGL_RS04505 at 565.444 kb on + strand, within SGL_RS04505 at 565.454 kb on + strand, within SGL_RS04505 at 565.466 kb on + strand, within SGL_RS04505 at 565.532 kb on + strand, within SGL_RS04505 at 565.578 kb on + strand, within SGL_RS04505 at 565.578 kb on + strand, within SGL_RS04505 at 565.586 kb on - strand, within SGL_RS04505 at 565.606 kb on + strand, within SGL_RS04505 at 565.615 kb on + strand, within SGL_RS04505 at 565.691 kb on - strand at 565.818 kb on + strand at 565.884 kb on - strand at 565.931 kb on + strand at 566.013 kb on + strand at 566.036 kb on + strand at 566.173 kb on + strand, within SGL_RS04510 at 566.253 kb on + strand, within SGL_RS04510 at 566.423 kb on - strand, within SGL_RS04510 at 566.542 kb on + strand, within SGL_RS04510 at 566.704 kb on - strand, within SGL_RS04510 at 566.781 kb on + strand at 566.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 565,066 - SGL_RS04505 0.65 -0.4 565,066 - SGL_RS04505 0.65 -0.1 565,066 - SGL_RS04505 0.65 +0.3 565,077 - SGL_RS04505 0.66 -0.5 565,180 + SGL_RS04505 0.70 +0.3 565,368 - SGL_RS04505 0.77 +0.4 565,444 + SGL_RS04505 0.81 +0.0 565,454 + SGL_RS04505 0.81 +0.0 565,466 + SGL_RS04505 0.81 +1.0 565,532 + SGL_RS04505 0.84 -0.0 565,578 + SGL_RS04505 0.86 -1.0 565,578 + SGL_RS04505 0.86 -0.8 565,586 - SGL_RS04505 0.86 +0.4 565,606 + SGL_RS04505 0.87 -0.1 565,615 + SGL_RS04505 0.87 +0.6 565,691 - -0.1 565,818 + +0.1 565,884 - +0.9 565,931 + +0.3 566,013 + +0.1 566,036 + +0.3 566,173 + SGL_RS04510 0.15 -2.5 566,253 + SGL_RS04510 0.26 -1.8 566,423 - SGL_RS04510 0.49 -1.3 566,542 + SGL_RS04510 0.65 -0.8 566,704 - SGL_RS04510 0.86 -1.4 566,781 + -0.3 566,909 + +0.5
Or see this region's nucleotide sequence