Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03770 and SGL_RS03775 are separated by 16 nucleotides SGL_RS03775 and SGL_RS03780 are separated by 146 nucleotides
SGL_RS03770: SGL_RS03770 - succinate--CoA ligase subunit beta, at 391,899 to 393,104
_RS03770
SGL_RS03775: SGL_RS03775 - membrane protein, at 393,121 to 393,849
_RS03775
SGL_RS03780: SGL_RS03780 - flotillin family protein, at 393,996 to 396,017
_RS03780
Position (kb) 393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 392.142 kb on - strand, within SGL_RS03770 at 392.165 kb on - strand, within SGL_RS03770 at 392.186 kb on + strand, within SGL_RS03770 at 392.195 kb on - strand, within SGL_RS03770 at 392.283 kb on + strand, within SGL_RS03770 at 392.351 kb on + strand, within SGL_RS03770 at 392.383 kb on + strand, within SGL_RS03770 at 392.430 kb on + strand, within SGL_RS03770 at 392.539 kb on + strand, within SGL_RS03770 at 392.584 kb on - strand, within SGL_RS03770 at 392.672 kb on + strand, within SGL_RS03770 at 392.771 kb on - strand, within SGL_RS03770 at 392.781 kb on - strand, within SGL_RS03770 at 392.781 kb on - strand, within SGL_RS03770 at 392.977 kb on - strand, within SGL_RS03770 at 392.992 kb on - strand at 393.017 kb on - strand at 393.099 kb on + strand at 393.112 kb on + strand at 393.305 kb on + strand, within SGL_RS03775 at 393.351 kb on + strand, within SGL_RS03775 at 393.371 kb on + strand, within SGL_RS03775 at 393.372 kb on + strand, within SGL_RS03775 at 393.372 kb on + strand, within SGL_RS03775 at 393.380 kb on - strand, within SGL_RS03775 at 393.578 kb on - strand, within SGL_RS03775 at 393.658 kb on + strand, within SGL_RS03775 at 393.658 kb on + strand, within SGL_RS03775 at 393.666 kb on - strand, within SGL_RS03775 at 393.772 kb on - strand, within SGL_RS03775 at 393.849 kb on - strand at 393.851 kb on + strand at 393.871 kb on - strand at 393.894 kb on - strand at 394.083 kb on - strand at 394.108 kb on + strand at 394.129 kb on - strand at 394.156 kb on + strand at 394.161 kb on + strand at 394.174 kb on - strand at 394.174 kb on - strand at 394.220 kb on - strand, within SGL_RS03780 at 394.236 kb on + strand, within SGL_RS03780 at 394.383 kb on + strand, within SGL_RS03780 at 394.383 kb on + strand, within SGL_RS03780 at 394.383 kb on + strand, within SGL_RS03780 at 394.391 kb on - strand, within SGL_RS03780 at 394.473 kb on + strand, within SGL_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 392,142 - SGL_RS03770 0.20 +0.0 392,165 - SGL_RS03770 0.22 -0.1 392,186 + SGL_RS03770 0.24 -0.2 392,195 - SGL_RS03770 0.25 +0.1 392,283 + SGL_RS03770 0.32 -0.3 392,351 + SGL_RS03770 0.37 +0.2 392,383 + SGL_RS03770 0.40 -0.1 392,430 + SGL_RS03770 0.44 -0.1 392,539 + SGL_RS03770 0.53 +0.3 392,584 - SGL_RS03770 0.57 -0.2 392,672 + SGL_RS03770 0.64 +0.1 392,771 - SGL_RS03770 0.72 -0.3 392,781 - SGL_RS03770 0.73 -1.3 392,781 - SGL_RS03770 0.73 -0.2 392,977 - SGL_RS03770 0.89 -1.2 392,992 - +0.6 393,017 - -0.4 393,099 + +0.1 393,112 + +0.1 393,305 + SGL_RS03775 0.25 +0.5 393,351 + SGL_RS03775 0.32 -2.6 393,371 + SGL_RS03775 0.34 -1.4 393,372 + SGL_RS03775 0.34 -1.4 393,372 + SGL_RS03775 0.34 -2.2 393,380 - SGL_RS03775 0.36 -1.1 393,578 - SGL_RS03775 0.63 -2.8 393,658 + SGL_RS03775 0.74 -0.5 393,658 + SGL_RS03775 0.74 -1.1 393,666 - SGL_RS03775 0.75 -2.9 393,772 - SGL_RS03775 0.89 -2.3 393,849 - +0.2 393,851 + -0.8 393,871 - -0.5 393,894 - -0.8 394,083 - +0.1 394,108 + +0.2 394,129 - -0.3 394,156 + +0.7 394,161 + +0.1 394,174 - -0.7 394,174 - +0.1 394,220 - SGL_RS03780 0.11 +0.2 394,236 + SGL_RS03780 0.12 -0.2 394,383 + SGL_RS03780 0.19 -0.3 394,383 + SGL_RS03780 0.19 -0.1 394,383 + SGL_RS03780 0.19 -0.3 394,391 - SGL_RS03780 0.20 -0.5 394,473 + SGL_RS03780 0.24 +0.3
Or see this region's nucleotide sequence