Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03530 and SGL_RS03535 are separated by 70 nucleotides SGL_RS03535 and SGL_RS03540 are separated by 161 nucleotides SGL_RS03540 and SGL_RS03545 overlap by 4 nucleotides SGL_RS03545 and SGL_RS03550 are separated by 0 nucleotides
SGL_RS03530: SGL_RS03530 - DUF29 domain-containing protein, at 351,036 to 351,467
_RS03530
SGL_RS03535: SGL_RS03535 - Uma2 family endonuclease, at 351,538 to 352,101
_RS03535
SGL_RS03540: SGL_RS03540 - ABC transporter ATP-binding protein, at 352,263 to 353,555
_RS03540
SGL_RS03545: SGL_RS03545 - glucose-1-phosphate cytidylyltransferase, at 353,552 to 354,322
_RS03545
SGL_RS03550: SGL_RS03550 - CDP-glucose 4,6-dehydratase, at 354,323 to 355,405
_RS03550
Position (kb) 352
353
354 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 351.305 kb on - strand, within SGL_RS03530 at 351.315 kb on - strand, within SGL_RS03530 at 351.315 kb on - strand, within SGL_RS03530 at 351.328 kb on - strand, within SGL_RS03530 at 351.520 kb on + strand at 351.520 kb on + strand at 351.922 kb on + strand, within SGL_RS03535 at 351.966 kb on - strand, within SGL_RS03535 at 352.226 kb on - strand at 352.324 kb on + strand at 352.334 kb on + strand at 352.336 kb on + strand at 352.422 kb on - strand, within SGL_RS03540 at 352.479 kb on - strand, within SGL_RS03540 at 352.479 kb on - strand, within SGL_RS03540 at 352.505 kb on + strand, within SGL_RS03540 at 352.537 kb on + strand, within SGL_RS03540 at 352.659 kb on + strand, within SGL_RS03540 at 352.670 kb on + strand, within SGL_RS03540 at 353.059 kb on + strand, within SGL_RS03540 at 353.061 kb on + strand, within SGL_RS03540 at 353.481 kb on + strand at 353.486 kb on + strand at 353.820 kb on - strand, within SGL_RS03545 at 354.014 kb on + strand, within SGL_RS03545 at 354.213 kb on - strand, within SGL_RS03545 at 354.409 kb on - strand at 354.459 kb on + strand, within SGL_RS03550 at 354.468 kb on - strand, within SGL_RS03550 at 354.504 kb on + strand, within SGL_RS03550
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 351,305 - SGL_RS03530 0.62 -0.3 351,315 - SGL_RS03530 0.65 +0.1 351,315 - SGL_RS03530 0.65 -0.1 351,328 - SGL_RS03530 0.68 +0.6 351,520 + +0.7 351,520 + +0.1 351,922 + SGL_RS03535 0.68 -0.4 351,966 - SGL_RS03535 0.76 +0.1 352,226 - +0.1 352,324 + -5.2 352,334 + -2.9 352,336 + -3.4 352,422 - SGL_RS03540 0.12 -3.8 352,479 - SGL_RS03540 0.17 -3.9 352,479 - SGL_RS03540 0.17 -1.7 352,505 + SGL_RS03540 0.19 -3.9 352,537 + SGL_RS03540 0.21 -4.6 352,659 + SGL_RS03540 0.31 -4.0 352,670 + SGL_RS03540 0.31 -5.0 353,059 + SGL_RS03540 0.62 -4.2 353,061 + SGL_RS03540 0.62 -5.0 353,481 + -2.8 353,486 + -5.1 353,820 - SGL_RS03545 0.35 -1.4 354,014 + SGL_RS03545 0.60 -1.3 354,213 - SGL_RS03545 0.86 -2.4 354,409 - -3.9 354,459 + SGL_RS03550 0.13 -3.3 354,468 - SGL_RS03550 0.13 -2.1 354,504 + SGL_RS03550 0.17 -1.6
Or see this region's nucleotide sequence