Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03515 and SGL_RS03520 are separated by 38 nucleotides SGL_RS03520 and SGL_RS03525 are separated by 180 nucleotides SGL_RS03525 and SGL_RS03530 are separated by 119 nucleotides
SGL_RS03515: SGL_RS03515 - Uma2 family endonuclease, at 348,701 to 349,429
_RS03515
SGL_RS03520: SGL_RS03520 - ABC transporter permease, at 349,468 to 350,298
_RS03520
SGL_RS03525: SGL_RS03525 - hypothetical protein, at 350,479 to 350,916
_RS03525
SGL_RS03530: SGL_RS03530 - DUF29 domain-containing protein, at 351,036 to 351,467
_RS03530
Position (kb) 349
350
351 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 348.595 kb on + strand at 348.907 kb on - strand, within SGL_RS03515 at 348.945 kb on - strand, within SGL_RS03515 at 349.006 kb on + strand, within SGL_RS03515 at 349.197 kb on - strand, within SGL_RS03515 at 349.278 kb on - strand, within SGL_RS03515 at 349.308 kb on + strand, within SGL_RS03515 at 349.329 kb on + strand, within SGL_RS03515 at 349.489 kb on - strand at 349.541 kb on - strand at 349.562 kb on - strand, within SGL_RS03520 at 349.644 kb on - strand, within SGL_RS03520 at 349.674 kb on + strand, within SGL_RS03520 at 349.831 kb on - strand, within SGL_RS03520 at 349.987 kb on + strand, within SGL_RS03520 at 350.454 kb on - strand at 350.454 kb on - strand at 350.584 kb on + strand, within SGL_RS03525 at 350.598 kb on - strand, within SGL_RS03525 at 350.731 kb on + strand, within SGL_RS03525 at 350.761 kb on + strand, within SGL_RS03525 at 350.871 kb on - strand, within SGL_RS03525 at 351.239 kb on - strand, within SGL_RS03530
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 348,595 + +0.3 348,907 - SGL_RS03515 0.28 +0.5 348,945 - SGL_RS03515 0.33 +0.0 349,006 + SGL_RS03515 0.42 -0.3 349,197 - SGL_RS03515 0.68 +0.4 349,278 - SGL_RS03515 0.79 +0.7 349,308 + SGL_RS03515 0.83 -0.1 349,329 + SGL_RS03515 0.86 +0.2 349,489 - -4.4 349,541 - -5.1 349,562 - SGL_RS03520 0.11 -4.5 349,644 - SGL_RS03520 0.21 -4.6 349,674 + SGL_RS03520 0.25 -2.5 349,831 - SGL_RS03520 0.44 -4.1 349,987 + SGL_RS03520 0.62 -4.7 350,454 - +0.2 350,454 - -0.1 350,584 + SGL_RS03525 0.24 -0.4 350,598 - SGL_RS03525 0.27 -0.1 350,731 + SGL_RS03525 0.58 +0.4 350,761 + SGL_RS03525 0.64 -0.4 350,871 - SGL_RS03525 0.89 +0.3 351,239 - SGL_RS03530 0.47 +0.1
Or see this region's nucleotide sequence