Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03490 and SGL_RS03495 are separated by 23 nucleotides SGL_RS03495 and SGL_RS03500 are separated by 99 nucleotides SGL_RS03500 and SGL_RS03505 are separated by 65 nucleotides SGL_RS03505 and SGL_RS19420 are separated by 173 nucleotides SGL_RS19420 and SGL_RS03515 are separated by 577 nucleotides
SGL_RS03490: SGL_RS03490 - YaaW family protein, at 343,863 to 344,720
_RS03490
SGL_RS03495: SGL_RS03495 - metal-binding protein, at 344,744 to 345,298
_RS03495
SGL_RS03500: SGL_RS03500 - tRNA-Val, at 345,398 to 345,470
_RS03500
SGL_RS03505: SGL_RS03505 - exopolysaccharide transport family protein, at 345,536 to 347,806
_RS03505
SGL_RS19420: SGL_RS19420 - hypothetical protein, at 347,980 to 348,123
_RS19420
SGL_RS03515: SGL_RS03515 - Uma2 family endonuclease, at 348,701 to 349,429
_RS03515
Position (kb) 345
346
347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 344.597 kb on - strand, within SGL_RS03490 at 344.613 kb on + strand, within SGL_RS03490 at 344.684 kb on - strand at 344.842 kb on + strand, within SGL_RS03495 at 344.850 kb on - strand, within SGL_RS03495 at 344.913 kb on - strand, within SGL_RS03495 at 344.965 kb on + strand, within SGL_RS03495 at 345.178 kb on + strand, within SGL_RS03495 at 345.265 kb on + strand at 345.305 kb on + strand at 345.605 kb on + strand at 345.605 kb on - strand at 345.882 kb on - strand, within SGL_RS03505 at 345.977 kb on + strand, within SGL_RS03505 at 346.174 kb on + strand, within SGL_RS03505 at 346.205 kb on + strand, within SGL_RS03505 at 346.231 kb on - strand, within SGL_RS03505 at 346.272 kb on - strand, within SGL_RS03505 at 346.276 kb on + strand, within SGL_RS03505 at 346.326 kb on + strand, within SGL_RS03505 at 346.361 kb on + strand, within SGL_RS03505 at 346.379 kb on - strand, within SGL_RS03505 at 346.504 kb on + strand, within SGL_RS03505 at 346.512 kb on - strand, within SGL_RS03505 at 346.512 kb on - strand, within SGL_RS03505 at 346.534 kb on + strand, within SGL_RS03505 at 346.663 kb on + strand, within SGL_RS03505 at 346.737 kb on + strand, within SGL_RS03505 at 346.745 kb on - strand, within SGL_RS03505 at 346.821 kb on + strand, within SGL_RS03505 at 346.974 kb on - strand, within SGL_RS03505 at 347.103 kb on - strand, within SGL_RS03505 at 347.336 kb on + strand, within SGL_RS03505 at 347.360 kb on - strand, within SGL_RS03505 at 347.668 kb on + strand at 347.690 kb on + strand at 347.753 kb on + strand at 347.804 kb on - strand at 347.858 kb on + strand at 347.883 kb on + strand at 347.931 kb on - strand at 347.933 kb on + strand at 347.933 kb on + strand at 347.933 kb on + strand at 347.985 kb on - strand at 347.999 kb on - strand, within SGL_RS19420 at 348.102 kb on - strand, within SGL_RS19420 at 348.139 kb on + strand at 348.395 kb on - strand at 348.396 kb on + strand at 348.456 kb on + strand at 348.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 344,597 - SGL_RS03490 0.86 -0.1 344,613 + SGL_RS03490 0.87 -1.0 344,684 - -0.8 344,842 + SGL_RS03495 0.18 -0.9 344,850 - SGL_RS03495 0.19 -0.8 344,913 - SGL_RS03495 0.30 -2.9 344,965 + SGL_RS03495 0.40 -0.8 345,178 + SGL_RS03495 0.78 +1.5 345,265 + -0.3 345,305 + -0.3 345,605 + +0.1 345,605 - +0.4 345,882 - SGL_RS03505 0.15 -1.2 345,977 + SGL_RS03505 0.19 -1.3 346,174 + SGL_RS03505 0.28 -0.9 346,205 + SGL_RS03505 0.29 -1.2 346,231 - SGL_RS03505 0.31 -1.1 346,272 - SGL_RS03505 0.32 -1.3 346,276 + SGL_RS03505 0.33 -0.7 346,326 + SGL_RS03505 0.35 -1.6 346,361 + SGL_RS03505 0.36 -1.3 346,379 - SGL_RS03505 0.37 -1.5 346,504 + SGL_RS03505 0.43 -0.8 346,512 - SGL_RS03505 0.43 -0.9 346,512 - SGL_RS03505 0.43 -2.2 346,534 + SGL_RS03505 0.44 -1.1 346,663 + SGL_RS03505 0.50 -1.5 346,737 + SGL_RS03505 0.53 -1.7 346,745 - SGL_RS03505 0.53 -2.1 346,821 + SGL_RS03505 0.57 -1.1 346,974 - SGL_RS03505 0.63 -3.4 347,103 - SGL_RS03505 0.69 -0.7 347,336 + SGL_RS03505 0.79 -1.4 347,360 - SGL_RS03505 0.80 -1.5 347,668 + -1.7 347,690 + -1.2 347,753 + -1.0 347,804 - -1.0 347,858 + -0.8 347,883 + -0.1 347,931 - -0.1 347,933 + -0.0 347,933 + +0.3 347,933 + +0.4 347,985 - +0.4 347,999 - SGL_RS19420 0.13 +0.1 348,102 - SGL_RS19420 0.85 +0.5 348,139 + +0.4 348,395 - +0.1 348,396 + +0.3 348,456 + +0.4 348,595 + +0.3
Or see this region's nucleotide sequence