Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03375 and SGL_RS03380 are separated by 251 nucleotides SGL_RS03380 and SGL_RS03385 are separated by 198 nucleotides
SGL_RS03375: SGL_RS03375 - hypothetical protein, at 320,785 to 321,447
_RS03375
SGL_RS03380: SGL_RS03380 - sulfite reductase, ferredoxin dependent, at 321,699 to 323,606
_RS03380
SGL_RS03385: SGL_RS03385 - FTR1 family protein, at 323,805 to 324,731
_RS03385
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 320.703 kb on + strand at 320.909 kb on + strand, within SGL_RS03375 at 320.928 kb on + strand, within SGL_RS03375 at 321.116 kb on - strand, within SGL_RS03375 at 321.176 kb on + strand, within SGL_RS03375 at 321.176 kb on + strand, within SGL_RS03375 at 321.176 kb on + strand, within SGL_RS03375 at 321.240 kb on - strand, within SGL_RS03375 at 321.332 kb on + strand, within SGL_RS03375 at 321.351 kb on - strand, within SGL_RS03375 at 321.368 kb on + strand, within SGL_RS03375 at 321.387 kb on + strand at 321.388 kb on + strand at 321.505 kb on + strand at 321.611 kb on - strand at 321.701 kb on - strand at 321.732 kb on - strand at 321.918 kb on - strand, within SGL_RS03380 at 321.956 kb on + strand, within SGL_RS03380 at 321.956 kb on + strand, within SGL_RS03380 at 321.956 kb on + strand, within SGL_RS03380 at 321.964 kb on - strand, within SGL_RS03380 at 321.964 kb on - strand, within SGL_RS03380 at 322.258 kb on + strand, within SGL_RS03380 at 322.417 kb on - strand, within SGL_RS03380 at 322.816 kb on - strand, within SGL_RS03380 at 322.920 kb on + strand, within SGL_RS03380 at 322.930 kb on + strand, within SGL_RS03380 at 322.958 kb on + strand, within SGL_RS03380 at 323.039 kb on + strand, within SGL_RS03380 at 323.204 kb on + strand, within SGL_RS03380 at 323.204 kb on + strand, within SGL_RS03380 at 323.212 kb on - strand, within SGL_RS03380 at 323.212 kb on - strand, within SGL_RS03380 at 323.238 kb on + strand, within SGL_RS03380 at 323.248 kb on - strand, within SGL_RS03380 at 323.305 kb on - strand, within SGL_RS03380 at 323.427 kb on - strand at 323.525 kb on + strand at 324.055 kb on - strand, within SGL_RS03385 at 324.182 kb on + strand, within SGL_RS03385 at 324.240 kb on + strand, within SGL_RS03385 at 324.248 kb on - strand, within SGL_RS03385 at 324.248 kb on - strand, within SGL_RS03385 at 324.391 kb on - strand, within SGL_RS03385 at 324.414 kb on + strand, within SGL_RS03385 at 324.510 kb on + strand, within SGL_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 320,703 + +0.1 320,909 + SGL_RS03375 0.19 -0.6 320,928 + SGL_RS03375 0.22 +0.2 321,116 - SGL_RS03375 0.50 -1.1 321,176 + SGL_RS03375 0.59 +0.1 321,176 + SGL_RS03375 0.59 +0.0 321,176 + SGL_RS03375 0.59 -0.1 321,240 - SGL_RS03375 0.69 -0.2 321,332 + SGL_RS03375 0.83 -0.5 321,351 - SGL_RS03375 0.85 +0.1 321,368 + SGL_RS03375 0.88 +2.5 321,387 + +0.0 321,388 + +0.1 321,505 + -0.7 321,611 - +0.5 321,701 - -2.9 321,732 - -2.2 321,918 - SGL_RS03380 0.11 -3.6 321,956 + SGL_RS03380 0.13 -1.3 321,956 + SGL_RS03380 0.13 -4.5 321,956 + SGL_RS03380 0.13 -2.8 321,964 - SGL_RS03380 0.14 -3.7 321,964 - SGL_RS03380 0.14 -0.8 322,258 + SGL_RS03380 0.29 -2.7 322,417 - SGL_RS03380 0.38 -1.2 322,816 - SGL_RS03380 0.59 -1.5 322,920 + SGL_RS03380 0.64 -3.8 322,930 + SGL_RS03380 0.65 -2.7 322,958 + SGL_RS03380 0.66 -2.5 323,039 + SGL_RS03380 0.70 -1.8 323,204 + SGL_RS03380 0.79 -1.2 323,204 + SGL_RS03380 0.79 -2.4 323,212 - SGL_RS03380 0.79 -2.2 323,212 - SGL_RS03380 0.79 -2.2 323,238 + SGL_RS03380 0.81 -0.9 323,248 - SGL_RS03380 0.81 -2.9 323,305 - SGL_RS03380 0.84 -1.6 323,427 - -2.4 323,525 + -0.8 324,055 - SGL_RS03385 0.27 +0.2 324,182 + SGL_RS03385 0.41 -0.0 324,240 + SGL_RS03385 0.47 +0.1 324,248 - SGL_RS03385 0.48 +0.4 324,248 - SGL_RS03385 0.48 -0.2 324,391 - SGL_RS03385 0.63 +0.2 324,414 + SGL_RS03385 0.66 +0.0 324,510 + SGL_RS03385 0.76 +0.4
Or see this region's nucleotide sequence