Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03060

Experiment: L/D cycles short day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03055 and SGL_RS03060 are separated by 146 nucleotidesSGL_RS03060 and SGL_RS03065 are separated by 51 nucleotides SGL_RS03055: SGL_RS03055 - protoporphyrinogen oxidase HemJ, at 256,647 to 257,279 _RS03055 SGL_RS03060: SGL_RS03060 - phosphoadenosine phosphosulfate reductase, at 257,426 to 258,175 _RS03060 SGL_RS03065: SGL_RS03065 - heat-inducible transcriptional repressor HrcA, at 258,227 to 259,363 _RS03065 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1at 256.686 kb on - strandat 257.240 kb on + strandat 257.359 kb on - strandat 257.397 kb on - strandat 257.397 kb on - strandat 257.428 kb on + strandat 257.691 kb on + strand, within SGL_RS03060at 257.699 kb on - strand, within SGL_RS03060at 257.711 kb on + strand, within SGL_RS03060at 257.866 kb on - strand, within SGL_RS03060at 258.024 kb on - strand, within SGL_RS03060at 258.052 kb on + strand, within SGL_RS03060at 258.056 kb on + strand, within SGL_RS03060at 258.297 kb on - strandat 258.335 kb on - strandat 258.619 kb on - strand, within SGL_RS03065at 258.853 kb on + strand, within SGL_RS03065at 259.099 kb on - strand, within SGL_RS03065at 259.149 kb on + strand, within SGL_RS03065

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Per-strain Table

Position Strand Gene LocusTag Fraction L/D cycles short day
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256,686 - -2.9
257,240 + -0.6
257,359 - +0.1
257,397 - -0.7
257,397 - -0.6
257,428 + -0.8
257,691 + SGL_RS03060 0.35 -3.7
257,699 - SGL_RS03060 0.36 -1.7
257,711 + SGL_RS03060 0.38 -3.0
257,866 - SGL_RS03060 0.59 -1.9
258,024 - SGL_RS03060 0.80 -1.8
258,052 + SGL_RS03060 0.83 -1.9
258,056 + SGL_RS03060 0.84 -1.3
258,297 - -0.6
258,335 - -0.6
258,619 - SGL_RS03065 0.34 -0.4
258,853 + SGL_RS03065 0.55 -0.9
259,099 - SGL_RS03065 0.77 -0.9
259,149 + SGL_RS03065 0.81 -0.6

Or see this region's nucleotide sequence