Experiment: L/D cycles short day
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02820 and SGL_RS02825 are separated by 208 nucleotides SGL_RS02825 and SGL_RS02830 are separated by 252 nucleotides SGL_RS02830 and SGL_RS02835 are separated by 9 nucleotides
SGL_RS02820: SGL_RS02820 - EAL domain-containing protein, at 202,554 to 204,395
_RS02820
SGL_RS02825: SGL_RS02825 - translational GTPase TypA, at 204,604 to 206,397
_RS02825
SGL_RS02830: SGL_RS02830 - hypothetical protein, at 206,650 to 206,853
_RS02830
SGL_RS02835: SGL_RS02835 - TAXI family TRAP transporter solute-binding subunit, at 206,863 to 208,392
_RS02835
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -2
-1
0
1 at 203.957 kb on + strand, within SGL_RS02820 at 204.093 kb on + strand, within SGL_RS02820 at 204.102 kb on - strand, within SGL_RS02820 at 204.263 kb on - strand at 204.322 kb on + strand at 204.552 kb on - strand at 204.552 kb on - strand at 204.714 kb on - strand at 204.733 kb on - strand at 204.735 kb on + strand at 204.759 kb on + strand at 204.884 kb on + strand, within SGL_RS02825 at 204.885 kb on - strand, within SGL_RS02825 at 204.892 kb on - strand, within SGL_RS02825 at 204.892 kb on - strand, within SGL_RS02825 at 204.962 kb on - strand, within SGL_RS02825 at 205.019 kb on - strand, within SGL_RS02825 at 205.053 kb on + strand, within SGL_RS02825 at 205.098 kb on - strand, within SGL_RS02825 at 205.206 kb on + strand, within SGL_RS02825 at 205.418 kb on + strand, within SGL_RS02825 at 205.426 kb on - strand, within SGL_RS02825 at 205.461 kb on + strand, within SGL_RS02825 at 205.490 kb on - strand, within SGL_RS02825 at 205.750 kb on + strand, within SGL_RS02825 at 205.784 kb on - strand, within SGL_RS02825 at 206.091 kb on + strand, within SGL_RS02825 at 206.195 kb on + strand, within SGL_RS02825 at 206.195 kb on + strand, within SGL_RS02825 at 206.203 kb on - strand, within SGL_RS02825 at 206.861 kb on + strand at 206.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L/D cycles short day remove 203,957 + SGL_RS02820 0.76 +0.1 204,093 + SGL_RS02820 0.84 +0.4 204,102 - SGL_RS02820 0.84 -0.5 204,263 - -0.3 204,322 + +0.0 204,552 - -0.3 204,552 - -0.1 204,714 - -1.2 204,733 - -1.2 204,735 + -0.5 204,759 + -1.2 204,884 + SGL_RS02825 0.16 -1.2 204,885 - SGL_RS02825 0.16 -0.7 204,892 - SGL_RS02825 0.16 -0.5 204,892 - SGL_RS02825 0.16 -1.4 204,962 - SGL_RS02825 0.20 -0.5 205,019 - SGL_RS02825 0.23 -0.9 205,053 + SGL_RS02825 0.25 -1.8 205,098 - SGL_RS02825 0.28 -0.9 205,206 + SGL_RS02825 0.34 -0.6 205,418 + SGL_RS02825 0.45 -1.4 205,426 - SGL_RS02825 0.46 -2.5 205,461 + SGL_RS02825 0.48 -1.1 205,490 - SGL_RS02825 0.49 -0.8 205,750 + SGL_RS02825 0.64 -1.3 205,784 - SGL_RS02825 0.66 -1.4 206,091 + SGL_RS02825 0.83 -1.3 206,195 + SGL_RS02825 0.89 -0.2 206,195 + SGL_RS02825 0.89 -1.3 206,203 - SGL_RS02825 0.89 -0.8 206,861 + -0.8 206,906 + +0.1
Or see this region's nucleotide sequence