Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19955

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13090 and SGL_RS19955 are separated by 182 nucleotidesSGL_RS19955 and SGL_RS19960 overlap by 35 nucleotidesSGL_RS19960 and SGL_RS13100 are separated by 27 nucleotidesSGL_RS13100 and SGL_RS13105 are separated by 104 nucleotides SGL_RS13090: SGL_RS13090 - urea ABC transporter ATP-binding protein UrtD, at 2,407,565 to 2,408,686 _RS13090 SGL_RS19955: SGL_RS19955 - hypothetical protein, at 2,408,869 to 2,409,228 _RS19955 SGL_RS19960: SGL_RS19960 - hypothetical protein, at 2,409,194 to 2,409,544 _RS19960 SGL_RS13100: SGL_RS13100 - hypothetical protein, at 2,409,572 to 2,409,925 _RS13100 SGL_RS13105: SGL_RS13105 - ABC transporter permease, at 2,410,030 to 2,410,914 _RS13105 Position (kb) 2408 2409 2410Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2408.019 kb on + strand, within SGL_RS13090at 2408.020 kb on - strand, within SGL_RS13090at 2408.025 kb on - strand, within SGL_RS13090at 2408.246 kb on + strand, within SGL_RS13090at 2408.302 kb on + strand, within SGL_RS13090at 2408.310 kb on - strand, within SGL_RS13090at 2408.325 kb on + strand, within SGL_RS13090at 2408.325 kb on - strand, within SGL_RS13090at 2408.404 kb on + strand, within SGL_RS13090at 2408.416 kb on + strand, within SGL_RS13090at 2408.424 kb on - strand, within SGL_RS13090at 2408.424 kb on - strand, within SGL_RS13090at 2408.637 kb on - strandat 2409.000 kb on + strand, within SGL_RS19955at 2409.046 kb on - strand, within SGL_RS19955at 2409.171 kb on - strand, within SGL_RS19955at 2409.347 kb on + strand, within SGL_RS19960at 2409.369 kb on - strand, within SGL_RS19960at 2409.443 kb on + strand, within SGL_RS19960at 2409.443 kb on + strand, within SGL_RS19960at 2409.493 kb on - strand, within SGL_RS19960at 2409.560 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,408,019 + SGL_RS13090 0.40 +0.3
2,408,020 - SGL_RS13090 0.41 -0.1
2,408,025 - SGL_RS13090 0.41 +4.6
2,408,246 + SGL_RS13090 0.61 -1.2
2,408,302 + SGL_RS13090 0.66 +1.0
2,408,310 - SGL_RS13090 0.66 +0.7
2,408,325 + SGL_RS13090 0.68 -1.1
2,408,325 - SGL_RS13090 0.68 +0.0
2,408,404 + SGL_RS13090 0.75 -1.0
2,408,416 + SGL_RS13090 0.76 -0.9
2,408,424 - SGL_RS13090 0.77 +0.7
2,408,424 - SGL_RS13090 0.77 +0.7
2,408,637 - +0.8
2,409,000 + SGL_RS19955 0.36 -2.1
2,409,046 - SGL_RS19955 0.49 -1.4
2,409,171 - SGL_RS19955 0.84 -2.9
2,409,347 + SGL_RS19960 0.44 -2.1
2,409,369 - SGL_RS19960 0.50 +0.1
2,409,443 + SGL_RS19960 0.71 -3.8
2,409,443 + SGL_RS19960 0.71 -2.1
2,409,493 - SGL_RS19960 0.85 -1.2
2,409,560 + +1.2

Or see this region's nucleotide sequence