Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13090 and SGL_RS19955 are separated by 182 nucleotides SGL_RS19955 and SGL_RS19960 overlap by 35 nucleotides SGL_RS19960 and SGL_RS13100 are separated by 27 nucleotides SGL_RS13100 and SGL_RS13105 are separated by 104 nucleotides
SGL_RS13090: SGL_RS13090 - urea ABC transporter ATP-binding protein UrtD, at 2,407,565 to 2,408,686
_RS13090
SGL_RS19955: SGL_RS19955 - hypothetical protein, at 2,408,869 to 2,409,228
_RS19955
SGL_RS19960: SGL_RS19960 - hypothetical protein, at 2,409,194 to 2,409,544
_RS19960
SGL_RS13100: SGL_RS13100 - hypothetical protein, at 2,409,572 to 2,409,925
_RS13100
SGL_RS13105: SGL_RS13105 - ABC transporter permease, at 2,410,030 to 2,410,914
_RS13105
Position (kb)
2408
2409
2410 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2408.019 kb on + strand, within SGL_RS13090 at 2408.020 kb on - strand, within SGL_RS13090 at 2408.025 kb on - strand, within SGL_RS13090 at 2408.246 kb on + strand, within SGL_RS13090 at 2408.302 kb on + strand, within SGL_RS13090 at 2408.310 kb on - strand, within SGL_RS13090 at 2408.325 kb on + strand, within SGL_RS13090 at 2408.325 kb on - strand, within SGL_RS13090 at 2408.404 kb on + strand, within SGL_RS13090 at 2408.416 kb on + strand, within SGL_RS13090 at 2408.424 kb on - strand, within SGL_RS13090 at 2408.424 kb on - strand, within SGL_RS13090 at 2408.637 kb on - strand at 2409.000 kb on + strand, within SGL_RS19955 at 2409.046 kb on - strand, within SGL_RS19955 at 2409.171 kb on - strand, within SGL_RS19955 at 2409.347 kb on + strand, within SGL_RS19960 at 2409.369 kb on - strand, within SGL_RS19960 at 2409.443 kb on + strand, within SGL_RS19960 at 2409.443 kb on + strand, within SGL_RS19960 at 2409.493 kb on - strand, within SGL_RS19960 at 2409.560 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,408,019 + SGL_RS13090 0.40 +0.3 2,408,020 - SGL_RS13090 0.41 -0.1 2,408,025 - SGL_RS13090 0.41 +4.6 2,408,246 + SGL_RS13090 0.61 -1.2 2,408,302 + SGL_RS13090 0.66 +1.0 2,408,310 - SGL_RS13090 0.66 +0.7 2,408,325 + SGL_RS13090 0.68 -1.1 2,408,325 - SGL_RS13090 0.68 +0.0 2,408,404 + SGL_RS13090 0.75 -1.0 2,408,416 + SGL_RS13090 0.76 -0.9 2,408,424 - SGL_RS13090 0.77 +0.7 2,408,424 - SGL_RS13090 0.77 +0.7 2,408,637 - +0.8 2,409,000 + SGL_RS19955 0.36 -2.1 2,409,046 - SGL_RS19955 0.49 -1.4 2,409,171 - SGL_RS19955 0.84 -2.9 2,409,347 + SGL_RS19960 0.44 -2.1 2,409,369 - SGL_RS19960 0.50 +0.1 2,409,443 + SGL_RS19960 0.71 -3.8 2,409,443 + SGL_RS19960 0.71 -2.1 2,409,493 - SGL_RS19960 0.85 -1.2 2,409,560 + +1.2
Or see this region's nucleotide sequence