Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18275 and SGL_RS18280 are separated by 249 nucleotides SGL_RS18280 and SGL_RS18285 are separated by 138 nucleotides
SGL_RS18275: SGL_RS18275 - cyclic nucleotide-binding domain-containing protein, at 3,548,465 to 3,549,706
_RS18275
SGL_RS18280: SGL_RS18280 - recombinase RecA, at 3,549,956 to 3,551,020
_RS18280
SGL_RS18285: SGL_RS18285 - ABC transporter permease, at 3,551,159 to 3,552,382
_RS18285
Position (kb)
3549
3550
3551
3552 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3549.220 kb on + strand, within SGL_RS18275 at 3549.289 kb on - strand, within SGL_RS18275 at 3549.371 kb on - strand, within SGL_RS18275 at 3549.533 kb on + strand, within SGL_RS18275 at 3549.543 kb on + strand, within SGL_RS18275 at 3549.606 kb on - strand at 3549.726 kb on - strand at 3551.098 kb on - strand at 3551.098 kb on - strand at 3551.200 kb on + strand at 3551.254 kb on - strand at 3551.294 kb on + strand, within SGL_RS18285 at 3551.302 kb on - strand, within SGL_RS18285 at 3551.302 kb on - strand, within SGL_RS18285 at 3551.302 kb on - strand, within SGL_RS18285 at 3551.302 kb on - strand, within SGL_RS18285 at 3551.331 kb on + strand, within SGL_RS18285 at 3551.423 kb on - strand, within SGL_RS18285 at 3551.437 kb on + strand, within SGL_RS18285 at 3551.478 kb on + strand, within SGL_RS18285 at 3551.478 kb on + strand, within SGL_RS18285 at 3551.604 kb on - strand, within SGL_RS18285 at 3551.700 kb on + strand, within SGL_RS18285 at 3551.738 kb on + strand, within SGL_RS18285 at 3551.741 kb on - strand, within SGL_RS18285 at 3551.907 kb on - strand, within SGL_RS18285
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,549,220 + SGL_RS18275 0.61 -0.9 3,549,289 - SGL_RS18275 0.66 -0.8 3,549,371 - SGL_RS18275 0.73 -0.5 3,549,533 + SGL_RS18275 0.86 -0.9 3,549,543 + SGL_RS18275 0.87 -0.9 3,549,606 - -1.0 3,549,726 - +0.8 3,551,098 - -0.0 3,551,098 - -0.2 3,551,200 + +2.4 3,551,254 - +1.7 3,551,294 + SGL_RS18285 0.11 +2.8 3,551,302 - SGL_RS18285 0.12 +1.6 3,551,302 - SGL_RS18285 0.12 +1.9 3,551,302 - SGL_RS18285 0.12 +4.3 3,551,302 - SGL_RS18285 0.12 +2.2 3,551,331 + SGL_RS18285 0.14 +2.3 3,551,423 - SGL_RS18285 0.22 +2.6 3,551,437 + SGL_RS18285 0.23 +2.6 3,551,478 + SGL_RS18285 0.26 +2.6 3,551,478 + SGL_RS18285 0.26 +1.9 3,551,604 - SGL_RS18285 0.36 +2.7 3,551,700 + SGL_RS18285 0.44 +1.7 3,551,738 + SGL_RS18285 0.47 +2.5 3,551,741 - SGL_RS18285 0.48 +2.7 3,551,907 - SGL_RS18285 0.61 +1.9
Or see this region's nucleotide sequence