Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18280

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18275 and SGL_RS18280 are separated by 249 nucleotidesSGL_RS18280 and SGL_RS18285 are separated by 138 nucleotides SGL_RS18275: SGL_RS18275 - cyclic nucleotide-binding domain-containing protein, at 3,548,465 to 3,549,706 _RS18275 SGL_RS18280: SGL_RS18280 - recombinase RecA, at 3,549,956 to 3,551,020 _RS18280 SGL_RS18285: SGL_RS18285 - ABC transporter permease, at 3,551,159 to 3,552,382 _RS18285 Position (kb) 3549 3550 3551 3552Strain fitness (log2 ratio) -1 0 1 2 3 4at 3549.220 kb on + strand, within SGL_RS18275at 3549.289 kb on - strand, within SGL_RS18275at 3549.371 kb on - strand, within SGL_RS18275at 3549.533 kb on + strand, within SGL_RS18275at 3549.543 kb on + strand, within SGL_RS18275at 3549.606 kb on - strandat 3549.726 kb on - strandat 3551.098 kb on - strandat 3551.098 kb on - strandat 3551.200 kb on + strandat 3551.254 kb on - strandat 3551.294 kb on + strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.331 kb on + strand, within SGL_RS18285at 3551.423 kb on - strand, within SGL_RS18285at 3551.437 kb on + strand, within SGL_RS18285at 3551.478 kb on + strand, within SGL_RS18285at 3551.478 kb on + strand, within SGL_RS18285at 3551.604 kb on - strand, within SGL_RS18285at 3551.700 kb on + strand, within SGL_RS18285at 3551.738 kb on + strand, within SGL_RS18285at 3551.741 kb on - strand, within SGL_RS18285at 3551.907 kb on - strand, within SGL_RS18285

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,549,220 + SGL_RS18275 0.61 -0.9
3,549,289 - SGL_RS18275 0.66 -0.8
3,549,371 - SGL_RS18275 0.73 -0.5
3,549,533 + SGL_RS18275 0.86 -0.9
3,549,543 + SGL_RS18275 0.87 -0.9
3,549,606 - -1.0
3,549,726 - +0.8
3,551,098 - -0.0
3,551,098 - -0.2
3,551,200 + +2.4
3,551,254 - +1.7
3,551,294 + SGL_RS18285 0.11 +2.8
3,551,302 - SGL_RS18285 0.12 +1.6
3,551,302 - SGL_RS18285 0.12 +1.9
3,551,302 - SGL_RS18285 0.12 +4.3
3,551,302 - SGL_RS18285 0.12 +2.2
3,551,331 + SGL_RS18285 0.14 +2.3
3,551,423 - SGL_RS18285 0.22 +2.6
3,551,437 + SGL_RS18285 0.23 +2.6
3,551,478 + SGL_RS18285 0.26 +2.6
3,551,478 + SGL_RS18285 0.26 +1.9
3,551,604 - SGL_RS18285 0.36 +2.7
3,551,700 + SGL_RS18285 0.44 +1.7
3,551,738 + SGL_RS18285 0.47 +2.5
3,551,741 - SGL_RS18285 0.48 +2.7
3,551,907 - SGL_RS18285 0.61 +1.9

Or see this region's nucleotide sequence