Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17115 and SGL_RS17120 overlap by 8 nucleotides SGL_RS17120 and SGL_RS17125 are separated by 329 nucleotides
SGL_RS17115: SGL_RS17115 - DUF3370 domain-containing protein, at 3,293,078 to 3,294,505
_RS17115
SGL_RS17120: SGL_RS17120 - response regulator transcription factor, at 3,294,498 to 3,295,250
_RS17120
SGL_RS17125: SGL_RS17125 - inositol monophosphatase family protein, at 3,295,580 to 3,296,386
_RS17125
Position (kb)
3294
3295
3296 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3293.742 kb on - strand, within SGL_RS17115 at 3294.017 kb on + strand, within SGL_RS17115 at 3294.291 kb on - strand, within SGL_RS17115 at 3294.296 kb on - strand, within SGL_RS17115 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.611 kb on + strand, within SGL_RS17120 at 3294.703 kb on + strand, within SGL_RS17120 at 3294.706 kb on - strand, within SGL_RS17120 at 3294.717 kb on + strand, within SGL_RS17120 at 3294.764 kb on + strand, within SGL_RS17120 at 3294.967 kb on + strand, within SGL_RS17120 at 3294.967 kb on + strand, within SGL_RS17120 at 3294.987 kb on + strand, within SGL_RS17120 at 3295.058 kb on + strand, within SGL_RS17120 at 3295.155 kb on + strand, within SGL_RS17120 at 3295.176 kb on + strand at 3295.184 kb on - strand at 3295.199 kb on - strand at 3295.247 kb on - strand at 3295.502 kb on + strand at 3295.636 kb on + strand at 3295.758 kb on - strand, within SGL_RS17125 at 3295.932 kb on + strand, within SGL_RS17125 at 3296.128 kb on + strand, within SGL_RS17125 at 3296.148 kb on + strand, within SGL_RS17125 at 3296.201 kb on - strand, within SGL_RS17125
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,293,742 - SGL_RS17115 0.46 +3.6 3,294,017 + SGL_RS17115 0.66 +3.4 3,294,291 - SGL_RS17115 0.85 +1.7 3,294,296 - SGL_RS17115 0.85 +2.8 3,294,607 + SGL_RS17120 0.14 -3.8 3,294,607 + SGL_RS17120 0.14 -1.1 3,294,607 + SGL_RS17120 0.14 -2.0 3,294,611 + SGL_RS17120 0.15 -5.3 3,294,703 + SGL_RS17120 0.27 -2.7 3,294,706 - SGL_RS17120 0.28 -1.0 3,294,717 + SGL_RS17120 0.29 -0.9 3,294,764 + SGL_RS17120 0.35 -3.5 3,294,967 + SGL_RS17120 0.62 -3.4 3,294,967 + SGL_RS17120 0.62 -2.6 3,294,987 + SGL_RS17120 0.65 -4.3 3,295,058 + SGL_RS17120 0.74 -2.1 3,295,155 + SGL_RS17120 0.87 -2.7 3,295,176 + -3.7 3,295,184 - -3.9 3,295,199 - -3.4 3,295,247 - -2.7 3,295,502 + -0.6 3,295,636 + -1.8 3,295,758 - SGL_RS17125 0.22 -1.9 3,295,932 + SGL_RS17125 0.44 -1.9 3,296,128 + SGL_RS17125 0.68 -2.2 3,296,148 + SGL_RS17125 0.70 -0.8 3,296,201 - SGL_RS17125 0.77 -1.9
Or see this region's nucleotide sequence