Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17110

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17100 and SGL_RS17105 are separated by 37 nucleotidesSGL_RS17105 and SGL_RS17110 are separated by 87 nucleotidesSGL_RS17110 and SGL_RS17115 are separated by 193 nucleotides SGL_RS17100: SGL_RS17100 - SWIM zinc finger family protein, at 3,291,097 to 3,291,966 _RS17100 SGL_RS17105: SGL_RS17105 - tRNA-Leu, at 3,292,004 to 3,292,089 _RS17105 SGL_RS17110: SGL_RS17110 - hypothetical protein, at 3,292,177 to 3,292,884 _RS17110 SGL_RS17115: SGL_RS17115 - DUF3370 domain-containing protein, at 3,293,078 to 3,294,505 _RS17115 Position (kb) 3292 3293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3291.326 kb on - strand, within SGL_RS17100at 3291.367 kb on + strand, within SGL_RS17100at 3291.393 kb on - strand, within SGL_RS17100at 3291.398 kb on + strand, within SGL_RS17100at 3291.621 kb on + strand, within SGL_RS17100at 3291.621 kb on + strand, within SGL_RS17100at 3291.634 kb on - strand, within SGL_RS17100at 3291.650 kb on + strand, within SGL_RS17100at 3291.665 kb on - strand, within SGL_RS17100at 3291.665 kb on - strand, within SGL_RS17100at 3291.822 kb on + strand, within SGL_RS17100at 3292.278 kb on - strand, within SGL_RS17110at 3292.325 kb on - strand, within SGL_RS17110at 3292.387 kb on + strand, within SGL_RS17110at 3292.587 kb on + strand, within SGL_RS17110at 3292.595 kb on - strand, within SGL_RS17110at 3292.596 kb on + strand, within SGL_RS17110at 3292.616 kb on + strand, within SGL_RS17110at 3292.789 kb on + strand, within SGL_RS17110at 3292.970 kb on - strandat 3293.223 kb on + strand, within SGL_RS17115at 3293.231 kb on - strand, within SGL_RS17115at 3293.360 kb on - strand, within SGL_RS17115at 3293.370 kb on + strand, within SGL_RS17115at 3293.483 kb on - strand, within SGL_RS17115at 3293.742 kb on - strand, within SGL_RS17115

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,291,326 - SGL_RS17100 0.26 +1.3
3,291,367 + SGL_RS17100 0.31 +2.0
3,291,393 - SGL_RS17100 0.34 +1.5
3,291,398 + SGL_RS17100 0.35 +0.6
3,291,621 + SGL_RS17100 0.60 +2.0
3,291,621 + SGL_RS17100 0.60 +1.6
3,291,634 - SGL_RS17100 0.62 +1.2
3,291,650 + SGL_RS17100 0.64 +2.1
3,291,665 - SGL_RS17100 0.65 +1.4
3,291,665 - SGL_RS17100 0.65 +0.7
3,291,822 + SGL_RS17100 0.83 +1.7
3,292,278 - SGL_RS17110 0.14 -1.5
3,292,325 - SGL_RS17110 0.21 -2.1
3,292,387 + SGL_RS17110 0.30 -1.8
3,292,587 + SGL_RS17110 0.58 -3.3
3,292,595 - SGL_RS17110 0.59 -0.3
3,292,596 + SGL_RS17110 0.59 -3.8
3,292,616 + SGL_RS17110 0.62 -3.7
3,292,789 + SGL_RS17110 0.86 -2.1
3,292,970 - +3.5
3,293,223 + SGL_RS17115 0.10 +3.5
3,293,231 - SGL_RS17115 0.11 +4.5
3,293,360 - SGL_RS17115 0.20 +5.0
3,293,370 + SGL_RS17115 0.20 +3.4
3,293,483 - SGL_RS17115 0.28 +3.8
3,293,742 - SGL_RS17115 0.46 +3.6

Or see this region's nucleotide sequence