Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16945

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16935 and SGL_RS16940 are separated by 82 nucleotidesSGL_RS16940 and SGL_RS16945 are separated by 184 nucleotidesSGL_RS16945 and SGL_RS16950 are separated by 21 nucleotides SGL_RS16935: SGL_RS16935 - hypothetical protein, at 3,252,992 to 3,253,726 _RS16935 SGL_RS16940: SGL_RS16940 - dephospho-CoA kinase, at 3,253,809 to 3,254,414 _RS16940 SGL_RS16945: SGL_RS16945 - DUF3854 domain-containing protein, at 3,254,599 to 3,257,670 _RS16945 SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887 _RS16950 Position (kb) 3254 3255 3256 3257 3258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3253.611 kb on + strand, within SGL_RS16935at 3253.747 kb on + strandat 3254.098 kb on + strand, within SGL_RS16940at 3254.276 kb on - strand, within SGL_RS16940at 3254.346 kb on + strand, within SGL_RS16940at 3254.346 kb on + strand, within SGL_RS16940at 3254.648 kb on - strandat 3255.411 kb on - strand, within SGL_RS16945at 3255.444 kb on - strand, within SGL_RS16945at 3255.655 kb on + strand, within SGL_RS16945at 3255.665 kb on + strand, within SGL_RS16945at 3255.670 kb on + strand, within SGL_RS16945at 3255.670 kb on + strand, within SGL_RS16945at 3255.755 kb on - strand, within SGL_RS16945at 3255.784 kb on - strand, within SGL_RS16945at 3255.795 kb on - strand, within SGL_RS16945at 3256.059 kb on - strand, within SGL_RS16945at 3256.063 kb on - strand, within SGL_RS16945at 3256.086 kb on + strand, within SGL_RS16945at 3256.183 kb on + strand, within SGL_RS16945at 3256.229 kb on + strand, within SGL_RS16945at 3256.372 kb on + strand, within SGL_RS16945at 3256.537 kb on + strand, within SGL_RS16945at 3256.654 kb on + strand, within SGL_RS16945at 3256.730 kb on - strand, within SGL_RS16945at 3256.928 kb on - strand, within SGL_RS16945at 3256.932 kb on + strand, within SGL_RS16945at 3256.973 kb on - strand, within SGL_RS16945at 3257.015 kb on + strand, within SGL_RS16945at 3257.167 kb on + strand, within SGL_RS16945at 3257.410 kb on - strandat 3257.613 kb on + strandat 3257.649 kb on + strandat 3257.824 kb on + strandat 3258.000 kb on + strand, within SGL_RS16950at 3258.248 kb on - strand, within SGL_RS16950at 3258.343 kb on + strand, within SGL_RS16950at 3258.361 kb on + strand, within SGL_RS16950at 3258.386 kb on - strand, within SGL_RS16950at 3258.401 kb on - strand, within SGL_RS16950at 3258.423 kb on + strand, within SGL_RS16950at 3258.522 kb on - strand, within SGL_RS16950at 3258.522 kb on - strand, within SGL_RS16950at 3258.552 kb on - strand, within SGL_RS16950at 3258.625 kb on - strand, within SGL_RS16950

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,253,611 + SGL_RS16935 0.84 -0.6
3,253,747 + -2.4
3,254,098 + SGL_RS16940 0.48 -1.2
3,254,276 - SGL_RS16940 0.77 +0.8
3,254,346 + SGL_RS16940 0.89 +0.5
3,254,346 + SGL_RS16940 0.89 -0.8
3,254,648 - +3.6
3,255,411 - SGL_RS16945 0.26 +3.9
3,255,444 - SGL_RS16945 0.28 +4.4
3,255,655 + SGL_RS16945 0.34 +2.6
3,255,665 + SGL_RS16945 0.35 +2.1
3,255,670 + SGL_RS16945 0.35 +3.7
3,255,670 + SGL_RS16945 0.35 +3.4
3,255,755 - SGL_RS16945 0.38 +4.6
3,255,784 - SGL_RS16945 0.39 +2.2
3,255,795 - SGL_RS16945 0.39 +2.3
3,256,059 - SGL_RS16945 0.48 +3.7
3,256,063 - SGL_RS16945 0.48 +4.3
3,256,086 + SGL_RS16945 0.48 +4.5
3,256,183 + SGL_RS16945 0.52 +3.6
3,256,229 + SGL_RS16945 0.53 +1.4
3,256,372 + SGL_RS16945 0.58 +4.2
3,256,537 + SGL_RS16945 0.63 +3.4
3,256,654 + SGL_RS16945 0.67 +3.5
3,256,730 - SGL_RS16945 0.69 +3.7
3,256,928 - SGL_RS16945 0.76 +3.4
3,256,932 + SGL_RS16945 0.76 +4.5
3,256,973 - SGL_RS16945 0.77 +4.3
3,257,015 + SGL_RS16945 0.79 +2.4
3,257,167 + SGL_RS16945 0.84 +3.6
3,257,410 - +2.8
3,257,613 + -2.0
3,257,649 + +0.1
3,257,824 + -3.1
3,258,000 + SGL_RS16950 0.14 +0.0
3,258,248 - SGL_RS16950 0.25 -2.0
3,258,343 + SGL_RS16950 0.30 -3.5
3,258,361 + SGL_RS16950 0.30 -1.5
3,258,386 - SGL_RS16950 0.32 -2.7
3,258,401 - SGL_RS16950 0.32 -3.7
3,258,423 + SGL_RS16950 0.33 -2.2
3,258,522 - SGL_RS16950 0.38 -1.3
3,258,522 - SGL_RS16950 0.38 -1.9
3,258,552 - SGL_RS16950 0.39 -1.8
3,258,625 - SGL_RS16950 0.42 -0.1

Or see this region's nucleotide sequence