Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16935 and SGL_RS16940 are separated by 82 nucleotides SGL_RS16940 and SGL_RS16945 are separated by 184 nucleotides SGL_RS16945 and SGL_RS16950 are separated by 21 nucleotides
SGL_RS16935: SGL_RS16935 - hypothetical protein, at 3,252,992 to 3,253,726
_RS16935
SGL_RS16940: SGL_RS16940 - dephospho-CoA kinase, at 3,253,809 to 3,254,414
_RS16940
SGL_RS16945: SGL_RS16945 - DUF3854 domain-containing protein, at 3,254,599 to 3,257,670
_RS16945
SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887
_RS16950
Position (kb)
3254
3255
3256
3257
3258 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3253.611 kb on + strand, within SGL_RS16935 at 3253.747 kb on + strand at 3254.098 kb on + strand, within SGL_RS16940 at 3254.276 kb on - strand, within SGL_RS16940 at 3254.346 kb on + strand, within SGL_RS16940 at 3254.346 kb on + strand, within SGL_RS16940 at 3254.648 kb on - strand at 3255.411 kb on - strand, within SGL_RS16945 at 3255.444 kb on - strand, within SGL_RS16945 at 3255.655 kb on + strand, within SGL_RS16945 at 3255.665 kb on + strand, within SGL_RS16945 at 3255.670 kb on + strand, within SGL_RS16945 at 3255.670 kb on + strand, within SGL_RS16945 at 3255.755 kb on - strand, within SGL_RS16945 at 3255.784 kb on - strand, within SGL_RS16945 at 3255.795 kb on - strand, within SGL_RS16945 at 3256.059 kb on - strand, within SGL_RS16945 at 3256.063 kb on - strand, within SGL_RS16945 at 3256.086 kb on + strand, within SGL_RS16945 at 3256.183 kb on + strand, within SGL_RS16945 at 3256.229 kb on + strand, within SGL_RS16945 at 3256.372 kb on + strand, within SGL_RS16945 at 3256.537 kb on + strand, within SGL_RS16945 at 3256.654 kb on + strand, within SGL_RS16945 at 3256.730 kb on - strand, within SGL_RS16945 at 3256.928 kb on - strand, within SGL_RS16945 at 3256.932 kb on + strand, within SGL_RS16945 at 3256.973 kb on - strand, within SGL_RS16945 at 3257.015 kb on + strand, within SGL_RS16945 at 3257.167 kb on + strand, within SGL_RS16945 at 3257.410 kb on - strand at 3257.613 kb on + strand at 3257.649 kb on + strand at 3257.824 kb on + strand at 3258.000 kb on + strand, within SGL_RS16950 at 3258.248 kb on - strand, within SGL_RS16950 at 3258.343 kb on + strand, within SGL_RS16950 at 3258.361 kb on + strand, within SGL_RS16950 at 3258.386 kb on - strand, within SGL_RS16950 at 3258.401 kb on - strand, within SGL_RS16950 at 3258.423 kb on + strand, within SGL_RS16950 at 3258.522 kb on - strand, within SGL_RS16950 at 3258.522 kb on - strand, within SGL_RS16950 at 3258.552 kb on - strand, within SGL_RS16950 at 3258.625 kb on - strand, within SGL_RS16950
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,253,611 + SGL_RS16935 0.84 -0.6 3,253,747 + -2.4 3,254,098 + SGL_RS16940 0.48 -1.2 3,254,276 - SGL_RS16940 0.77 +0.8 3,254,346 + SGL_RS16940 0.89 +0.5 3,254,346 + SGL_RS16940 0.89 -0.8 3,254,648 - +3.6 3,255,411 - SGL_RS16945 0.26 +3.9 3,255,444 - SGL_RS16945 0.28 +4.4 3,255,655 + SGL_RS16945 0.34 +2.6 3,255,665 + SGL_RS16945 0.35 +2.1 3,255,670 + SGL_RS16945 0.35 +3.7 3,255,670 + SGL_RS16945 0.35 +3.4 3,255,755 - SGL_RS16945 0.38 +4.6 3,255,784 - SGL_RS16945 0.39 +2.2 3,255,795 - SGL_RS16945 0.39 +2.3 3,256,059 - SGL_RS16945 0.48 +3.7 3,256,063 - SGL_RS16945 0.48 +4.3 3,256,086 + SGL_RS16945 0.48 +4.5 3,256,183 + SGL_RS16945 0.52 +3.6 3,256,229 + SGL_RS16945 0.53 +1.4 3,256,372 + SGL_RS16945 0.58 +4.2 3,256,537 + SGL_RS16945 0.63 +3.4 3,256,654 + SGL_RS16945 0.67 +3.5 3,256,730 - SGL_RS16945 0.69 +3.7 3,256,928 - SGL_RS16945 0.76 +3.4 3,256,932 + SGL_RS16945 0.76 +4.5 3,256,973 - SGL_RS16945 0.77 +4.3 3,257,015 + SGL_RS16945 0.79 +2.4 3,257,167 + SGL_RS16945 0.84 +3.6 3,257,410 - +2.8 3,257,613 + -2.0 3,257,649 + +0.1 3,257,824 + -3.1 3,258,000 + SGL_RS16950 0.14 +0.0 3,258,248 - SGL_RS16950 0.25 -2.0 3,258,343 + SGL_RS16950 0.30 -3.5 3,258,361 + SGL_RS16950 0.30 -1.5 3,258,386 - SGL_RS16950 0.32 -2.7 3,258,401 - SGL_RS16950 0.32 -3.7 3,258,423 + SGL_RS16950 0.33 -2.2 3,258,522 - SGL_RS16950 0.38 -1.3 3,258,522 - SGL_RS16950 0.38 -1.9 3,258,552 - SGL_RS16950 0.39 -1.8 3,258,625 - SGL_RS16950 0.42 -0.1
Or see this region's nucleotide sequence