Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16290

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16280 and SGL_RS16290 are separated by 655 nucleotidesSGL_RS16290 and SGL_RS16295 are separated by 182 nucleotides SGL_RS16280: SGL_RS16280 - L,D-transpeptidase, at 3,103,070 to 3,103,486 _RS16280 SGL_RS16290: SGL_RS16290 - DNA polymerase I, at 3,104,142 to 3,107,102 _RS16290 SGL_RS16295: SGL_RS16295 - hypothetical protein, at 3,107,285 to 3,108,493 _RS16295 Position (kb) 3104 3105 3106 3107 3108Strain fitness (log2 ratio) -1 0 1 2at 3103.194 kb on + strand, within SGL_RS16280at 3103.273 kb on - strand, within SGL_RS16280at 3103.323 kb on + strand, within SGL_RS16280at 3103.380 kb on + strand, within SGL_RS16280at 3103.511 kb on - strandat 3103.946 kb on - strandat 3104.124 kb on - strandat 3106.611 kb on + strand, within SGL_RS16290at 3106.794 kb on - strand, within SGL_RS16290at 3107.434 kb on - strand, within SGL_RS16295at 3107.493 kb on - strand, within SGL_RS16295at 3107.563 kb on + strand, within SGL_RS16295at 3107.595 kb on - strand, within SGL_RS16295at 3107.598 kb on + strand, within SGL_RS16295at 3107.609 kb on + strand, within SGL_RS16295at 3107.617 kb on - strand, within SGL_RS16295at 3107.617 kb on - strand, within SGL_RS16295at 3107.631 kb on - strand, within SGL_RS16295at 3107.651 kb on - strand, within SGL_RS16295at 3107.687 kb on + strand, within SGL_RS16295at 3107.721 kb on + strand, within SGL_RS16295at 3107.737 kb on + strand, within SGL_RS16295at 3107.755 kb on - strand, within SGL_RS16295at 3107.759 kb on + strand, within SGL_RS16295at 3107.760 kb on - strand, within SGL_RS16295at 3107.787 kb on - strand, within SGL_RS16295at 3107.832 kb on + strand, within SGL_RS16295at 3108.018 kb on + strand, within SGL_RS16295at 3108.026 kb on - strand, within SGL_RS16295at 3108.028 kb on + strand, within SGL_RS16295at 3108.030 kb on + strand, within SGL_RS16295at 3108.038 kb on - strand, within SGL_RS16295at 3108.045 kb on - strand, within SGL_RS16295at 3108.050 kb on - strand, within SGL_RS16295

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,103,194 + SGL_RS16280 0.30 +1.1
3,103,273 - SGL_RS16280 0.49 +2.2
3,103,323 + SGL_RS16280 0.61 +1.4
3,103,380 + SGL_RS16280 0.74 +0.7
3,103,511 - +1.2
3,103,946 - -0.3
3,104,124 - -0.4
3,106,611 + SGL_RS16290 0.83 +0.9
3,106,794 - SGL_RS16290 0.90 +1.6
3,107,434 - SGL_RS16295 0.12 -1.0
3,107,493 - SGL_RS16295 0.17 +0.2
3,107,563 + SGL_RS16295 0.23 +0.1
3,107,595 - SGL_RS16295 0.26 +0.5
3,107,598 + SGL_RS16295 0.26 +1.0
3,107,609 + SGL_RS16295 0.27 -1.0
3,107,617 - SGL_RS16295 0.27 +0.9
3,107,617 - SGL_RS16295 0.27 +0.4
3,107,631 - SGL_RS16295 0.29 -1.4
3,107,651 - SGL_RS16295 0.30 -1.7
3,107,687 + SGL_RS16295 0.33 +1.2
3,107,721 + SGL_RS16295 0.36 -0.1
3,107,737 + SGL_RS16295 0.37 +0.3
3,107,755 - SGL_RS16295 0.39 +0.0
3,107,759 + SGL_RS16295 0.39 +0.7
3,107,760 - SGL_RS16295 0.39 +1.4
3,107,787 - SGL_RS16295 0.42 -0.8
3,107,832 + SGL_RS16295 0.45 -0.3
3,108,018 + SGL_RS16295 0.61 -0.0
3,108,026 - SGL_RS16295 0.61 -1.3
3,108,028 + SGL_RS16295 0.61 -1.3
3,108,030 + SGL_RS16295 0.62 +0.0
3,108,038 - SGL_RS16295 0.62 +0.8
3,108,045 - SGL_RS16295 0.63 +1.0
3,108,050 - SGL_RS16295 0.63 -0.1

Or see this region's nucleotide sequence