Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15380 and SGL_RS15385 are separated by 116 nucleotides SGL_RS15385 and SGL_RS20170 are separated by 99 nucleotides SGL_RS20170 and SGL_RS15390 are separated by 24 nucleotides SGL_RS15390 and SGL_RS15395 are separated by 286 nucleotides SGL_RS15395 and SGL_RS15400 are separated by 17 nucleotides
SGL_RS15380: SGL_RS15380 - SulP family inorganic anion transporter, at 2,902,831 to 2,904,501
_RS15380
SGL_RS15385: SGL_RS15385 - potassium channel family protein, at 2,904,618 to 2,905,235
_RS15385
SGL_RS20170: SGL_RS20170 - hypothetical protein, at 2,905,335 to 2,905,457
_RS20170
SGL_RS15390: SGL_RS15390 - ABC transporter ATP-binding protein, at 2,905,482 to 2,906,510
_RS15390
SGL_RS15395: SGL_RS15395 - imidazoleglycerol-phosphate dehydratase HisB, at 2,906,797 to 2,907,429
_RS15395
SGL_RS15400: SGL_RS15400 - Uma2 family endonuclease, at 2,907,447 to 2,908,058
_RS15400
Position (kb)
2905
2906
2907 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2904.755 kb on - strand, within SGL_RS15385 at 2904.812 kb on - strand, within SGL_RS15385 at 2904.819 kb on + strand, within SGL_RS15385 at 2905.218 kb on + strand at 2905.386 kb on - strand, within SGL_RS20170 at 2905.628 kb on - strand, within SGL_RS15390 at 2905.765 kb on - strand, within SGL_RS15390 at 2905.768 kb on + strand, within SGL_RS15390 at 2905.876 kb on - strand, within SGL_RS15390 at 2906.104 kb on - strand, within SGL_RS15390 at 2906.203 kb on + strand, within SGL_RS15390 at 2906.203 kb on - strand, within SGL_RS15390 at 2906.326 kb on - strand, within SGL_RS15390 at 2906.341 kb on + strand, within SGL_RS15390 at 2906.366 kb on - strand, within SGL_RS15390 at 2906.553 kb on - strand at 2906.637 kb on + strand at 2906.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,904,755 - SGL_RS15385 0.22 +0.2 2,904,812 - SGL_RS15385 0.31 +1.3 2,904,819 + SGL_RS15385 0.33 +0.7 2,905,218 + +0.2 2,905,386 - SGL_RS20170 0.41 -0.7 2,905,628 - SGL_RS15390 0.14 -2.4 2,905,765 - SGL_RS15390 0.28 -1.7 2,905,768 + SGL_RS15390 0.28 +0.6 2,905,876 - SGL_RS15390 0.38 -3.5 2,906,104 - SGL_RS15390 0.60 -1.1 2,906,203 + SGL_RS15390 0.70 -2.9 2,906,203 - SGL_RS15390 0.70 -2.4 2,906,326 - SGL_RS15390 0.82 -0.1 2,906,341 + SGL_RS15390 0.83 -1.8 2,906,366 - SGL_RS15390 0.86 -1.2 2,906,553 - -2.4 2,906,637 + -1.4 2,906,645 - -0.3
Or see this region's nucleotide sequence