Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15390

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15380 and SGL_RS15385 are separated by 116 nucleotidesSGL_RS15385 and SGL_RS20170 are separated by 99 nucleotidesSGL_RS20170 and SGL_RS15390 are separated by 24 nucleotidesSGL_RS15390 and SGL_RS15395 are separated by 286 nucleotidesSGL_RS15395 and SGL_RS15400 are separated by 17 nucleotides SGL_RS15380: SGL_RS15380 - SulP family inorganic anion transporter, at 2,902,831 to 2,904,501 _RS15380 SGL_RS15385: SGL_RS15385 - potassium channel family protein, at 2,904,618 to 2,905,235 _RS15385 SGL_RS20170: SGL_RS20170 - hypothetical protein, at 2,905,335 to 2,905,457 _RS20170 SGL_RS15390: SGL_RS15390 - ABC transporter ATP-binding protein, at 2,905,482 to 2,906,510 _RS15390 SGL_RS15395: SGL_RS15395 - imidazoleglycerol-phosphate dehydratase HisB, at 2,906,797 to 2,907,429 _RS15395 SGL_RS15400: SGL_RS15400 - Uma2 family endonuclease, at 2,907,447 to 2,908,058 _RS15400 Position (kb) 2905 2906 2907Strain fitness (log2 ratio) -3 -2 -1 0 1at 2904.755 kb on - strand, within SGL_RS15385at 2904.812 kb on - strand, within SGL_RS15385at 2904.819 kb on + strand, within SGL_RS15385at 2905.218 kb on + strandat 2905.386 kb on - strand, within SGL_RS20170at 2905.628 kb on - strand, within SGL_RS15390at 2905.765 kb on - strand, within SGL_RS15390at 2905.768 kb on + strand, within SGL_RS15390at 2905.876 kb on - strand, within SGL_RS15390at 2906.104 kb on - strand, within SGL_RS15390at 2906.203 kb on + strand, within SGL_RS15390at 2906.203 kb on - strand, within SGL_RS15390at 2906.326 kb on - strand, within SGL_RS15390at 2906.341 kb on + strand, within SGL_RS15390at 2906.366 kb on - strand, within SGL_RS15390at 2906.553 kb on - strandat 2906.637 kb on + strandat 2906.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,904,755 - SGL_RS15385 0.22 +0.2
2,904,812 - SGL_RS15385 0.31 +1.3
2,904,819 + SGL_RS15385 0.33 +0.7
2,905,218 + +0.2
2,905,386 - SGL_RS20170 0.41 -0.7
2,905,628 - SGL_RS15390 0.14 -2.4
2,905,765 - SGL_RS15390 0.28 -1.7
2,905,768 + SGL_RS15390 0.28 +0.6
2,905,876 - SGL_RS15390 0.38 -3.5
2,906,104 - SGL_RS15390 0.60 -1.1
2,906,203 + SGL_RS15390 0.70 -2.9
2,906,203 - SGL_RS15390 0.70 -2.4
2,906,326 - SGL_RS15390 0.82 -0.1
2,906,341 + SGL_RS15390 0.83 -1.8
2,906,366 - SGL_RS15390 0.86 -1.2
2,906,553 - -2.4
2,906,637 + -1.4
2,906,645 - -0.3

Or see this region's nucleotide sequence